Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e08
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920     29   2.6  
03_05_0421 + 24065725-24066052,24066811-24067040                       29   3.4  
06_02_0035 + 10816723-10819497,10819964-10820011                       28   6.0  
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152...    28   7.9  
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926...    28   7.9  
07_03_0325 - 16809700-16809774,16810262-16810316,16810467-168107...    28   7.9  
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407           28   7.9  

>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
          Length = 128

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 214 ARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 44
           AR   PP RQ   PP+A   +  +P    + Y SL     D L +LR  +   + W R+
Sbjct: 65  ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123


>03_05_0421 + 24065725-24066052,24066811-24067040
          Length = 185

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 246 LGHYPAQG-NAAKGRGNH-HRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTR 398
           +G +P+ G     GRG   HRG+ L R R    +   PG  V RR A  +  R
Sbjct: 1   MGDWPSAGARLGDGRGEAGHRGEALARARPAIRKRRRPGALVNRRRATPRFAR 53


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 252 HYPAQGNAAKGRGNHHR-GDGLQRKRDYW 335
           H   +G AA   G HHR GD + ++  YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270


>12_01_0203 +
           1520079-1520302,1522346-1522405,1522794-1523016,
           1523038-1523434,1523522-1523781,1523866-1524011,
           1524044-1524317,1524501-1525547
          Length = 876

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 109 GMTDLL-VALRHLIY---PTAIWPRDTRHVVKLIIL 14
           G  DLL V L HL Y   P  +WP+D R + KL  L
Sbjct: 522 GKPDLLDVDLHHLSYVKAPGKVWPKDARPLRKLRFL 557


>07_03_1386 -
           26192019-26192073,26192272-26192397,26192570-26192622,
           26192722-26192807,26192896-26193017,26193096-26193155,
           26193787-26193866,26193949-26194087,26194273-26194367,
           26194792-26194860,26195015-26195131,26195839-26195913,
           26196590-26196961
          Length = 482

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 PPKETLQKDVEITIVETDYNENVIIGYKGYYQAY 360
           PP  T + D EI  +E D+++ VIIG    ++ Y
Sbjct: 162 PPPLTNKADWEINPLELDFSKAVIIGKDDLFRCY 195


>07_03_0325 -
           16809700-16809774,16810262-16810316,16810467-16810737,
           16810944-16811079,16812261-16812353,16813019-16813063,
           16813409-16813543
          Length = 269

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +1

Query: 454 IRQQCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYH 603
           +R   E  E L   W  + ++   D      W +G   V+   NN F  H
Sbjct: 79  LRNMSEYAEYLFQSWRDEDDK--NDESSGPSWFRGHRWVRNPKNNGFRPH 126


>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
          Length = 473

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 298 IVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKT 417
           +VE  + +N+ +      + + Y+GGSL P   V+ S+++
Sbjct: 31  VVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,667
Number of Sequences: 37544
Number of extensions: 385731
Number of successful extensions: 1320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)