Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e07
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...   144   8e-36
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual    113   2e-26
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    36   0.007
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    30   0.27 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.4  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   7.8  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  144 bits (350), Expect = 8e-36
 Identities = 71/98 (72%), Positives = 75/98 (76%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
           TEYHLGLLK KLAK R+QLLEP+ K G KGEGFDVLKSGDARVA IGFPSVGK       
Sbjct: 23  TEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSVGKSTLLSAI 82

Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                  ASYEFTTLT IPGV+EY GA IQ+LDLPGII
Sbjct: 83  TKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGII 120


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score =  113 bits (272), Expect = 2e-26
 Identities = 55/98 (56%), Positives = 67/98 (68%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
           T  HLG+LKAKLAK + +L+ P+  GG  G GFDV ++G   V  IGFPSVGK       
Sbjct: 24  TAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSVGKSTLMTQL 83

Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                EAA+YEFTTLT +PGV++Y GA IQ+LDLPGII
Sbjct: 84  TGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGII 121


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 497 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
           + R  L+ G+P+VGK            +   Y FTT +   G  +Y+    Q++D PGI+
Sbjct: 167 NTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGIL 226


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +2

Query: 506 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVI------EYRGAHIQLLDLPG 667
           + L+G P+ GK            +   YEFTT+    G I      ++     +L D+PG
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPG 298

Query: 668 II 673
           II
Sbjct: 299 II 300


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 195 PHDSASLSDNYLPRSQLIDNVFRL 124
           PHDS+ LS NY P S L    F +
Sbjct: 438 PHDSSMLSSNYRPPSALSPRNFNV 461


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 30  NYILDRH*IKFKNLYSFLV 86
           N++L+ H ++F +LY F+V
Sbjct: 295 NFVLENHLVRFSSLYIFIV 313


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 125 YLIKTEFTVSIISY*KTIQILKFYLMPIQNIIM 27
           +L K E    I+   +T+QILK Y  PI NI M
Sbjct: 53  HLTKAEEVPDILM--QTVQILKSYSTPIANIEM 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,193
Number of Sequences: 5004
Number of extensions: 45547
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)