Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12e07
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 134 5e-32
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 129 2e-30
07_01_0075 - 558829-560859 38 0.007
06_01_0668 - 4882174-4884204 38 0.007
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 36 0.030
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 36 0.040
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 31 0.65
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 31 0.86
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 8.0
01_06_0191 - 27334412-27335155 28 8.0
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 134 bits (325), Expect = 5e-32
Identities = 68/100 (68%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
Frame = +2
Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPSVGKXXXXX 553
T +HLGLLKAKLAK R +LL P+ KGG GEGFDV KSGDARV L+GFPSVGK
Sbjct: 34 TAHHLGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLN 93
Query: 554 XXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
E A+YEFTTLTCIPGVI Y+GA IQLLDLPGII
Sbjct: 94 KLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGII 133
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 129 bits (311), Expect = 2e-30
Identities = 64/98 (65%), Positives = 70/98 (71%)
Frame = +2
Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
TEYHLG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVGK
Sbjct: 23 TEYHLGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTML 82
Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
EAASYEFTTLTCIPG+I+Y IQLLDLPGII
Sbjct: 83 TGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGII 120
>07_01_0075 - 558829-560859
Length = 676
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 497 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 674 GR 679
R
Sbjct: 227 DR 228
>06_01_0668 - 4882174-4884204
Length = 676
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 497 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 674 GR 679
R
Sbjct: 227 DR 228
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 506 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGIIGR 679
+ L+G P+VGK E SY FTT + G I Q+ D PG++ R
Sbjct: 247 LCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGILMGHIVSNHERFQVTDTPGLLTR 304
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 500 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRG-AHIQLLDLPGII 673
A V L+G P+ GK E A Y FTTL G + Y +++ D+PG+I
Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTYEDYFSVKVADIPGLI 398
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 212 QKLRKKSREHRKIKVKKLQT*NY-CNQEQTIIEVYRKKKFQITNIK*NYVCGSSITTTEY 388
++++K++ + VK+ Q + C EQTI VY K T + + CG T E
Sbjct: 387 KQMQKRASDKAAFSVKRCQELAFECGVEQTIESVYAMSKMFETEYQREFFCGQ--LTPEL 444
Query: 389 HLGLLK 406
LG K
Sbjct: 445 RLGYFK 450
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 500 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR-GAHIQLLDLPGII 673
A V ++G P+ GK A+Y FTTL GV+ A + + DLPG++
Sbjct: 453 ADVGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVVSLDFDATMVVADLPGLL 511
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 554 SIKGSTYPQKESLSKQLEHH 495
++KG+T PQ E + Q++HH
Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 612 IHVSVVNS*LAASECV*VRVDKRVDLPTEGKPIKATRASPDFSTSKP 472
+ V+V N+ A VDK V LP E +KA A+P ST+KP
Sbjct: 158 VEVTVTNALSAVKPLAVYSVDK-VLLPFELFGVKAPAAAPTASTAKP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,321
Number of Sequences: 37544
Number of extensions: 257774
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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