Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e07
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                  146   1e-35
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)             106   1e-23
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   89   4e-18
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.023
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               32   0.50 
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         29   4.7  
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   6.2  
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score =  146 bits (354), Expect = 1e-35
 Identities = 73/99 (73%), Positives = 78/99 (78%), Gaps = 1/99 (1%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXX 556
           TEYHLGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK      
Sbjct: 23  TEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTK 82

Query: 557 XXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                   ASYEFTTLTCIPGVI Y GA+IQLLDLPGII
Sbjct: 83  LTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGII 121


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score =  106 bits (255), Expect = 1e-23
 Identities = 55/79 (69%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXX 556
           TEYHLGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK      
Sbjct: 23  TEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTK 82

Query: 557 XXXXXXEAASYEFTTLTCI 613
                   ASYEFTTLT I
Sbjct: 83  LTQTQSACASYEFTTLTGI 101


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +2

Query: 476 FDVLKSGDARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLL 655
           FDV K+GDAR+  +GFPSVGK            E A+YEFTTLT +PGVI Y+GA IQLL
Sbjct: 41  FDVAKTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLL 100

Query: 656 DLPGII 673
           DLPGII
Sbjct: 101 DLPGII 106


>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 497 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
           + R  L+ GFP+VGK            +   Y FTT +   G ++Y+    Q++D PG++
Sbjct: 82  NTRTLLVCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGVL 141


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 515 IGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGIIGRCCS 688
           +GFP+ GK              A+Y FTTL    G++EY     Q+ ++P  I R C+
Sbjct: 1   VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY-DDFSQIAEIP--IERYCN 55


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 244  KNKGKKTTNMKLL*SGTNHNRSL*EKE-VSNYKHQMK 351
            +++G+K   +KL  S  +H + L EK+   NYK ++K
Sbjct: 1399 RSEGEKVVMLKLQESSDSHRKELMEKDGTENYKRELK 1435


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 510 ATRASPDF--STSKPSPLSPPFFEGSSNCD 427
           + +ASP F  S S+ SP SPP   GSS  D
Sbjct: 221 SNKASPRFAISPSRDSPTSPPLRPGSSGSD 250


>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 503 RVALIGFPSVGKXXXXXXXXXXXXEAASYE-FTTLTCIPGVIEYRGAHIQLLDLPGII 673
           +VA+IG P+ GK             A + +  TT     GV    G  I LLD PG++
Sbjct: 41  KVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLV 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,092
Number of Sequences: 59808
Number of extensions: 313339
Number of successful extensions: 751
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)