Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e07
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical p...   157   9e-39
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...   125   3e-29
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...   125   3e-29
Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical pr...    41   0.001
AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    40   0.002
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    40   0.002
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    28   5.4  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   9.5  

>L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical
           protein C02F5.3 protein.
          Length = 366

 Score =  157 bits (380), Expect = 9e-39
 Identities = 75/98 (76%), Positives = 80/98 (81%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
           TEYHLGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVGK       
Sbjct: 23  TEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVGKSTLLSSM 82

Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                EAA YEFTTLTCIPGVI Y GA+IQLLDLPGII
Sbjct: 83  TSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGII 120


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  125 bits (302), Expect = 3e-29
 Identities = 60/98 (61%), Positives = 68/98 (69%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
           T  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK       
Sbjct: 23  TNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNL 82

Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                E A+YEFTTLT +PGVI Y+GA IQLLDLPGII
Sbjct: 83  AGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 120


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  125 bits (302), Expect = 3e-29
 Identities = 60/98 (61%), Positives = 68/98 (69%)
 Frame = +2

Query: 380 TEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXX 559
           T  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK       
Sbjct: 23  TNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNL 82

Query: 560 XXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
                E A+YEFTTLT +PGVI Y+GA IQLLDLPGII
Sbjct: 83  AGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 120


>Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical
           protein M01E5.2 protein.
          Length = 358

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 467 GEGFDVLKSGDARV----ALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 634
           GEG +++   + RV     L+GFP+ GK            + ASY FTTL    GV+ Y 
Sbjct: 174 GEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYE 233

Query: 635 G-AHIQLLDLPGII 673
               I + D+PG+I
Sbjct: 234 DFEQIAVADIPGLI 247


>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 512 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
           L GFP+VGK            E   Y FTT     G ++YR    Q++D PGI+
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGIL 227


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 512 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGAHIQLLDLPGII 673
           L GFP+VGK            E   Y FTT     G ++YR    Q++D PGI+
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGIL 227


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 631 IFYNSRYTCKCCEFITC 581
           + +N RY+C+CC +  C
Sbjct: 47  VSFNKRYSCRCCRYEKC 63


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 534 PTEGKPIKATRASPDFSTSK-PSPLSPP 454
           P EG P  A   +P  STS+ P PL PP
Sbjct: 24  PREGAPPPAPPLAPGASTSQAPPPLQPP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,756
Number of Sequences: 27780
Number of extensions: 252736
Number of successful extensions: 688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)