Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12e06
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 66 3e-11
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 32 0.38
04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149 31 0.87
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 29 2.6
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.5
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 3.5
07_01_0215 - 1607473-1609494 29 4.6
07_03_0905 + 22459687-22460071,22461766-22461888,22461986-224620... 28 6.1
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 28 6.1
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 28 6.1
12_02_0288 + 16856922-16858046 28 8.1
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 28 8.1
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 28 8.1
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/112 (35%), Positives = 56/112 (50%)
Frame = +1
Query: 133 RYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYL 312
R V QLQ++V +C G+SRG+R F+E L F + NP + V + R + P + G Y
Sbjct: 4 RGVWQLQKLVVNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKGIYK 63
Query: 313 NGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWT 468
N + + V N E+I+ R G +LR T PSVQG WT
Sbjct: 64 NHNERVVCVRNLAPEDILLQATRLRNSLGRK-VVKLRTRHVTKRPSVQGTWT 114
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 32.3 bits (70), Expect = 0.38
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +3
Query: 318 GQIVDERPQQNPRGDRKMG--RIVPN-STRQQLELETPQVPVHEPPLGPRTLDSVHVQ-- 482
G I+ PQQ P+G R R PN Q++ L P +P PP GP L +Q
Sbjct: 476 GSIISPTPQQGPKGSRPSRGLRGRPNVRDPQRMGLPVPLMP--PPPFGPLGLPPGPMQPI 533
Query: 483 GPRIEH 500
GP + H
Sbjct: 534 GPNMSH 539
>04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149
Length = 70
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 148 LQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLK 270
++ I F FC+S+ AS R+F++++ D NP + V ++
Sbjct: 11 VKEIRFLFCQSSPASAPAREFVKKNYGDIKARNPSLPVLIR 51
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 84 IFKIGVRPCALEKWRRTIRVSIAENSLQVLQIQRSQPWYERLHRARFG*FLKRQ 245
+FK +R A W+R + + + E +L++ QP Y LH F +K Q
Sbjct: 66 LFKDTLRKAA-HAWKRIVELRLTEEEANLLRLYVDQPGYVDLHWGMFVPAIKGQ 118
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 400 NNWNSRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELPD 516
N WN+R ++ Q T P + F D E+ E PD
Sbjct: 211 NFWNTRCKRIQRTGEPLYPKEFNHFKLTDLEVMNCESPD 249
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 141 VSIAENSLQVLQIQRSQPWYERLHR 215
+ I S Q L++Q + WYE+LHR
Sbjct: 1311 IGILTYSQQHLEVQLKESWYEKLHR 1335
>07_01_0215 - 1607473-1609494
Length = 673
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 151 QRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGP-VIVGEYLNGDRL 327
+R+V C S+ +S+GM++F+ + + + +V L R +G ++V +Y++ L
Sbjct: 368 KRVVAVKCVSHESSQGMKEFVAEIVSIGQLRHRNLVQLLGYCRRKGELLLVYDYMSNGSL 427
Query: 328 WMSVHNKTHEEIVKWVELFRTQQG 399
++ E + W + F +G
Sbjct: 428 DNYLYCDLTEPTLDWAQRFNIVKG 451
>07_03_0905 +
22459687-22460071,22461766-22461888,22461986-22462086,
22462229-22462301,22462771-22462848,22462995-22463065,
22463539-22463841,22464180-22464302,22464539-22464736
Length = 484
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 100 FVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVD 231
FV AP G+G V Q+ CKSNGAS G+++ D D
Sbjct: 294 FVPAPGYEGLGDLVEQISS-----CKSNGASTGVQEDRSNDFND 332
>05_07_0364 - 29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -3
Query: 365 TISSWVLLWTLIHNLSPFKYSPTMTGPRCLRGFKYTTTPGLSFEKSTKSCSMKSLIPRLA 186
T +SW +LWTL +YS RC G Y P + F+ S K ++SL
Sbjct: 853 TAASWAMLWTL-------RYSTFRRNNRCFVG--YVVDPQI-FDISPKQPLLRSLC--CG 900
Query: 185 PLDLQ 171
PLD++
Sbjct: 901 PLDIR 905
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 318 GQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG 452
G IV ER NP G ++ G V +S+ QQ+ P+ PLG
Sbjct: 171 GVIVGERRCSNPSGKKQQGGRVRSSSAQQM------APIRPKPLG 209
>12_02_0288 + 16856922-16858046
Length = 374
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 322 RLWMSVHNKTHEEIVKWVELFRT-QQGNNWNSRLRKYQ-YTNHPSVQGPWTPFTFKDP 489
R +M V +K H ++V+ L QQG ++ R+ + YT+H + WT +K P
Sbjct: 57 RNYMLVFHKRHRQLVQDSYLPEILQQGRALTAKNRQRRLYTHHENHMSTWTHVPWKHP 114
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 366 KMGRIVPNSTRQQLELETPQVPVHEPPLGPR 458
++ +++P STR++L V V E P GPR
Sbjct: 691 RVAKLLPRSTRERLRKLVESVFVGEGPTGPR 721
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 27.9 bits (59), Expect = 8.1
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = +3
Query: 255 GGVFKAT*TSWAGHSWGIFERGQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQV-- 428
GG F + W S + E QIV R +N RK + + +Q+ +LE Q
Sbjct: 967 GGTFSSRHNQWRAGSAQVQEALQIVKCRANKNVTPVRKKEKQKMSDQQQEEDLEEKQKMG 1026
Query: 429 -PVHEPPLGPRTLDSVHVQGPRIEHGRTTRREIR**QSTTRN 551
E PR + + + P T +E+R + T RN
Sbjct: 1027 DQQQEEDQNPREAEMIE-EAPVQLFSITQNQEMRDVEDTNRN 1067
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,975
Number of Sequences: 37544
Number of extensions: 417679
Number of successful extensions: 1157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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