Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e06
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical pr...   122   2e-28
AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical...    36   0.027
Z36753-4|CAA85333.1|  163|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    28   5.5  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    28   7.3  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical
           protein C25A1.13 protein.
          Length = 189

 Score =  122 bits (294), Expect = 2e-28
 Identities = 62/158 (39%), Positives = 90/158 (56%)
 Frame = +1

Query: 94  SAFVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKP 273
           S F++ P  NG+ RY  QL RI  +FCK + +S G+R+FIE  LV+  + NP VV+Y +P
Sbjct: 27  SDFLKIPAYNGISRYTNQLHRITVRFCKQSESSVGVRNFIENQLVEIGRKNPSVVIYAQP 86

Query: 274 RRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSV 453
            R+  P I  EY NG  L ++  N T +E+ K V L  ++ G     +L   Q    PS+
Sbjct: 87  VRNSNPSIRAEYGNGRTLQINAKNMTQDEVSKDVHLLFSRSGEP-VVKLESRQSALVPSI 145

Query: 454 QGPWTPFTFKDPELNTAELPDVRFGSNNRLPATATEQL 567
           QG WTP T+   E+NT +LP  +F  +     +ATE +
Sbjct: 146 QGQWTPITWLPTEMNTEQLPAKQFSKHKSTATSATEYI 183


>AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical
           protein Y63D3A.7 protein.
          Length = 92

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +1

Query: 148 LQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRL 327
           L+ I    C+ + AS G+R FIE D V   K NP   + ++      P +   Y +G   
Sbjct: 10  LREIRIHVCQKSPASAGVRAFIENDYVGIKKANPQFPILIREASGIVPRVFARYEHGVER 69

Query: 328 WMSVHNKTHEEIVKWVELFRTQQ 396
             ++ + + E +   +    +Q+
Sbjct: 70  VATLEDLSRENVKSTITQLASQK 92


>Z36753-4|CAA85333.1|  163|Caenorhabditis elegans Hypothetical
           protein T09A5.5 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)
 Frame = +1

Query: 133 RYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYL-KPRRHRGPVIVGEY 309
           R+V     +   +  ++  + G+  F+E+ L    ++NP V  +L +      P +VGEY
Sbjct: 13  RFVPHFVALRLSWTHNDLKAEGLEQFVEECLPAIRENNPQVKYFLQRSYTTCDPFVVGEY 72

Query: 310 LNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFTFKDP 489
                    V+ K+ E+++  +E      G ++    ++      P  Q  W   T    
Sbjct: 73  SWLRHRKKRVNWKSKEQVLSMIE--EMSIGGDYREGYKRGVNRRLPRGQELWDTETMGHD 130

Query: 490 ELNTAELPDVRFGSNNRLPATATEQLRLMFEK 585
             +            + LP TA       + K
Sbjct: 131 VFHVTSKWKADIPEEDELPITAKTHPNFTYRK 162


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 328 WMSVHNKTHEEIVKWVELFRTQQ 396
           W+ V++K  EEIV W++ +R ++
Sbjct: 284 WLDVYSKDLEEIVNWIKEYREKK 306


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 140 TYRPTPFFKGARTNADFKNRLLADIYFVFQPLH--LNSWVML 21
           ++ PT F     T A++ N+ L +++F+   LH  L+++V+L
Sbjct: 271 SFLPTNFVVTTSTLAEYNNQALINLFFIHMSLHGLLSTFVIL 312


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 241 DNPGVVVYLKP------RRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGN 402
           DNP +  Y++P      R H G  I   +L+   L    HN   E + K++  +  ++  
Sbjct: 307 DNPPIDHYMRPFQNALERPHHGEFITRNHLSPGNLTREHHNTLLEYLSKFMNAYPNEKKF 366

Query: 403 NW 408
           +W
Sbjct: 367 SW 368


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 369 MGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVHVQGPRIEHGRTTRREI 524
           +G  +P+  R+ L LETP    HE  L   T+ +V  Q   +    +T  E+
Sbjct: 57  VGTCMPDIFRKPLILETPTAITHELTLQWTTVSNVEEQKVMVTDENSTMSEV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,443
Number of Sequences: 27780
Number of extensions: 362659
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)