Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e06
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.4  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 503 PNYPT*DSVVTIDYPQRQLN 562
           PN PT DS V+   P+ +LN
Sbjct: 16  PNMPTMDSTVSSAKPEPELN 35


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 296 MTGPRCLRGFKYTTTPGLS 240
           +T P  + G KY  TP LS
Sbjct: 254 LTLPGAMEGLKYYVTPNLS 272


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 296 MTGPRCLRGFKYTTTPGLS 240
           +T P  + G KY  TP LS
Sbjct: 307 LTLPGAMEGLKYYVTPNLS 325


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 297 YDRPTMSTWL*I-HHHSRVVF*EINQI 220
           YDR ++S WL +  HH+ +    +N +
Sbjct: 114 YDRDSLSCWLQMTKHHNFIKVCSVNDV 140


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 396 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQ 310
           +LSSE ++P  D +  + ++     +PV+
Sbjct: 115 ILSSESYNPQVDFVADYKIEGKVLLLPVR 143


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 488 GSLNVNGVQGPWTEGWF 438
           G+ N+NG    W +G F
Sbjct: 224 GNYNINGFNFQWKDGLF 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 616 TPPFLIHPTFVSRTSVSTVQLPLRVVDCYYRISRRVVRPC 497
           T PFL  P      S S  +L L +++ +   S  +  PC
Sbjct: 17  TSPFLGGPQLTDVCSASNGELFLALLNFFVATSPVIGEPC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,499
Number of Sequences: 438
Number of extensions: 5582
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)