Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e05
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318...    28   4.1  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     28   5.5  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    27   7.2  

>02_05_1346 -
           35831261-35831371,35831609-35831779,35831850-35831888,
           35831987-35832049,35832616-35832679,35832709-35832778,
           35832866-35832934,35833101-35833186,35833670-35833800,
           35834021-35834083,35834166-35834211,35834542-35834618,
           35834690-35834724,35835480-35835542,35835632-35835719,
           35836027-35836077,35836201-35836269
          Length = 431

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +1

Query: 178 ELVNQYLDAPKSEKLEFVYNCSDLDINEEDLKSLCLTKNIAYFTERYNAPTVLKAQPAVY 357
           +   QYL+  K       +N  DL   +ED   +   K++A  T  + +   LKA     
Sbjct: 310 QFFRQYLEPIKLNDAHIKWNSEDLSYLKEDKFLIQFGKDVASATPLHGSDAALKAHNMDA 369

Query: 358 DAFIKHSE 381
           D  I++++
Sbjct: 370 DVRIQYND 377


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -2

Query: 277 EILNLLHLYPSRNNCIQIL----AFHFWARLNIGLQV 179
           EIL L++ YPSR N   IL    A    +RLNI +++
Sbjct: 257 EILVLIYEYPSRENLYDILYGVKAVRLVSRLNIAIKI 293


>04_04_0348 +
           24568834-24568904,24569019-24569148,24569310-24569459,
           24569546-24569650,24569808-24570029,24570162-24570274,
           24570371-24570470,24571125-24571325,24571401-24571549,
           24571624-24571765,24571851-24571991,24572098-24572286,
           24572622-24572835,24573198-24573291,24573671-24573905,
           24574242-24574433,24574919-24575017,24575443-24575532,
           24575709-24575912,24575994-24576269,24576974-24577096,
           24577453-24577608,24577686-24577802,24577878-24577957,
           24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 296 IFLVKHRDFKSSSF-ISKSEQLYTNSSFSLL 207
           I +   +DF +SSF +++ +  Y  SSFSLL
Sbjct: 521 ILVASTQDFLTSSFLVTRKDNFYDRSSFSLL 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,888
Number of Sequences: 37544
Number of extensions: 204496
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)