Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e05
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    29   2.8  
U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 265 DLKSLCLT-KNIAYFTERYNAPTVLKAQPAVY-DAFIKHSELFINAICQMDEKQ 420
           D+  LC    + A   + Y      K  P  Y DAF++HSE  +NA+ + +++Q
Sbjct: 19  DVSQLCFNLTHCATSYKHYAFQLASKIAPKRYNDAFLEHSEEHLNALRKQNQQQ 72


>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 199 DAPKSEKLEFVYNCSDLDINEEDLKSLCLTKNIAY 303
           DAPKS +LE V   SDL   +++LKSL L     Y
Sbjct: 25  DAPKSPELEEVSTVSDL---QDELKSLRLENKDLY 56


>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 202 APKSEKLEFVYNCSDLDINEEDL 270
           AP +EK+ +++  ++++INEEDL
Sbjct: 151 APINEKIMYLHYYAEVEINEEDL 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,356
Number of Sequences: 27780
Number of extensions: 219818
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)