Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e05
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.37 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 139 CIAADIKGQVEQLELVNQYLDAPKSEKLEFVYNCSDLDINEEDLKS 276
           CI  + K  +E +E   +Y + P+ EKL+  +NC     N  D K+
Sbjct: 43  CIG-ETKTTIEDVE-ATEYGEFPEDEKLKCYFNCVLEKFNVMDKKN 86


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 381 FAVFYECIVNRWL 343
           F+  YE + NRWL
Sbjct: 101 FSAIYEVLENRWL 113


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 521 IYILFSIKYSNAHK 480
           +Y L SIKY NA K
Sbjct: 327 LYNLMSIKYRNAFK 340


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 296 IFLVKHRDFKSSSFISKSEQL 234
           + ++KHR+F+SS  I  S++L
Sbjct: 654 LMMLKHREFRSS--IKASDKL 672


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,598
Number of Sequences: 438
Number of extensions: 2708
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)