Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e04
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    30   0.33 
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   3.1  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   5.3  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   7.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   9.3  
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    25   9.3  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.3  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 198 LVFFDVSHLRQPSTGSLSGRHAVLQWLLL*DSIEYLP 308
           L F +V H+     GSL   HA+++WL+    +E++P
Sbjct: 368 LYFSNVDHMSSLILGSLKLAHAIMKWLV--SDVEHIP 402


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 473 SSRSSGLTHSPLISASWSNTNPFLHVPQSTTDLIQVLGGKRVDGS 339
           S+R +G  + P+ SAS    NP   VP ST +L  +L    V  S
Sbjct: 113 SARYAGF-NIPMPSASMFGPNPENPVPPSTEELANMLSNPMVQSS 156


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 382 VVDCGTCKKGLVLDHDADISGECVR--PDDRE 471
           + +CGTC K  +     D++G+ +   PDD E
Sbjct: 161 IEECGTCTKDQIEAPKPDVTGDSLEEFPDDYE 192


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 412 LVLDHDADISGECVRPDDREESAVLPPY 495
           L  DH+ D+    +   D EE + LPPY
Sbjct: 18  LKTDHEIDLEKGPLPEYDSEEESTLPPY 45


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 412 LVLDHDADISGECVRPDDREESAVLPPY 495
           L  DH+ D+    +   D EE   LPPY
Sbjct: 18  LKTDHEIDLEKGPLPEYDSEEEGALPPY 45


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 7   ARRFCIRLSR-ASSEN*YFLPFDAKGLFIVYITCLSDL 117
           A R  I L+R A +E  YF+P + K +F+V I  ++++
Sbjct: 65  AEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNI 102


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 412 LVLDHDADISGECVRPDDREESAVLPPY 495
           L  DH+ D+    +   D EE   LPPY
Sbjct: 18  LKTDHEIDLEKGPLPEYDSEEEGALPPY 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,417
Number of Sequences: 5004
Number of extensions: 41408
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)