Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e04
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0525 - 9138107-9138237,9138327-9139301,9139379-9139507,913...    30   1.4  
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880...    28   7.3  
01_05_0277 + 20310426-20312216                                         27   9.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    27   9.7  

>03_02_0525 -
           9138107-9138237,9138327-9139301,9139379-9139507,
           9139623-9139867,9139986-9140137,9140236-9140346
          Length = 580

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 369 SIGWKTG*WFALQFFAVNAFSANIQCYLTVITTGALRVFLTTN 241
           ++G   G W A++FFA N     + C+L V TT  L++    N
Sbjct: 519 TVGVPAGGWVAIRFFADNPGVWFMHCHLEVHTTWGLKMAWVVN 561


>08_02_0739 +
           20584264-20584626,20586943-20587011,20587696-20588006,
           20588447-20588648,20588887-20588958
          Length = 338

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +1

Query: 262 QCSSGYYCEIALNICRECINCEELKRE--PSTRFPPNTCIKSVVDCGTCKKGLVLDHD 429
           QC   ++C      C  CI+ EEL       + F    C   +  C TC +     H+
Sbjct: 255 QCRGCFFCVARCETCGGCIDLEELSETELACSDFLCMECWLPLPKCSTCNRPYCKRHE 312


>01_05_0277 + 20310426-20312216
          Length = 596

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 280 YCEIALNICRECINCEELKREPSTRFPPNTCIKSVVDCGTCKKG 411
           +C +  ++  E I  E ++    + F PN  I S + CG CK+G
Sbjct: 465 FCRLGRSLDGESIMAEMIE----SGFQPNEAICSALVCGFCKEG 504


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 495 RVGADRHRATVVRRHRILLAEAQGYVQG 578
           R    R +A +VRRHR  L+E   + QG
Sbjct: 187 RAATQRQKALLVRRHRANLSEMLEFTQG 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,363
Number of Sequences: 37544
Number of extensions: 262897
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)