Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12e04
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 33 0.20
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11) 29 3.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.2
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45) 28 5.7
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 28 7.5
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.9
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 27 9.9
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1
Query: 232 PQPVR-CQEDTQCSSGYYCEIALNICRECINCEELKREPSTRFPPNT-CI-KSVVDC 393
PQP R C+ T+CSSG+ C L++C + + + +P+ + P NT C+ KS C
Sbjct: 222 PQPDRSCKNSTECSSGHDCHPFLHVCFKRL---RIVNDPAPK-PQNTNCVCKSTEYC 274
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +1
Query: 244 RCQEDTQCSSGYYCEIALNICRECINCEELKREPSTRFPPNTCIKSVVDCGTCKKGLVLD 423
RC ++ C+ G YC ++ + C+ +P+T P C ++ C G
Sbjct: 339 RCHDNNGCNQGEYCH---DVFKFCLEVPTGYSDPATPTPRGECAQN----SDCMAG---Q 388
Query: 424 HDADISGECVRPDDREESAV 483
+ DI C+ P + +AV
Sbjct: 389 YCHDIYRVCLTPHNVSNNAV 408
>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 199 LCFLMSLTYVSPQPVR-CQEDTQCSSGYYCEIALNICRECINCEELKREPSTRFPPNTCI 375
L ++SL + PV+ C++ ++C GYYC + +E I C +L C+
Sbjct: 4 LWLIISLLVLFLSPVKSCRKTSECLEGYYCCKSHCTPKE-IRCNDLCNRDEDCARDELCV 62
Query: 376 KSVVDCGTCKKGLVLD 423
+ + C C K L D
Sbjct: 63 QHM--CMACSKRLSCD 76
>SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)
Length = 523
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -2
Query: 473 SSRSSGLTHSPLISASWSNTNPFLHVPQSTTDLIQVLGGKRV 348
S+ G T++P SN NPF QS D QV GGK V
Sbjct: 431 STSQWGATNAPPHGFD-SNRNPFGEPTQSDADFDQVFGGKAV 471
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1
Query: 250 QEDTQCSSGYYCEIA--LNICRECINCE-----ELKREPSTRFPPNTCIKSVVDCGTCKK 408
+E + C +GYYCE+A IC + C +LK P + + + V C C
Sbjct: 888 KECSLCPAGYYCEVAGIPLICPQGYYCPYGTGLDLKSCPRGTYGNQSGLYDVTQCLPCDP 947
Query: 409 GLVL--DHDADISGEC 450
G H + +G+C
Sbjct: 948 GKYCADQHMGNYTGDC 963
>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -2
Query: 473 SSRSSGLTHSPLISASWSNTNPFLHVPQSTTDLIQVLGGKRV 348
S+ G T++P SN NPF QS D QV GGK V
Sbjct: 412 STSQWGATNAPPHGFD-SNRNPFGEPTQSDADFDQVFGGKAV 452
>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +1
Query: 235 QPVRCQEDTQCSSGYYCEIALNICR-ECIN---CEELKR 339
+PV+C DT+C+ ++ N+ R +CIN C+E KR
Sbjct: 41 EPVQCGWDTRCAKIFFKLPKTNVYRKQCINIAYCKERKR 79
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 259 TQCSSGYYCEIALNICRECINCEELKREPSTRFPPNTC 372
T CSSGYY C+ CE + P+T P C
Sbjct: 211 TPCSSGYYANTLRKTA--CVRCEAGFKCPTTSAAPIAC 246
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 247 CQEDTQCSSGYYCEIALNICRECINCEELKREPSTRFPPNT 369
C D +C G C + C+ + C +LKR+ ST PP T
Sbjct: 623 CLSDLECDEGSKC--CSDGCK--LKCVQLKRQASTPPPPPT 659
>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
Length = 248
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 244 RCQEDTQCSSGYYCEIALNICREC 315
RCQ D++C + Y C N+C C
Sbjct: 52 RCQTDSECVARYRCIHRDNLCLRC 75
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 301 ICRECINCEELKREPSTRFPPNTCIKSVVDCGTCKK 408
+CR NCE L+ T+ N ++ + GT +K
Sbjct: 120 VCRSRANCEYLEACKKTKIEENVTLRGGIGAGTFRK 155
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/82 (21%), Positives = 40/82 (48%)
Frame = +2
Query: 32 RALHPKISTSYHLMQKDCLLFILRV*VIYIDNSDFIISYSFCLSPSKRTK*FGFCPCVF* 211
R++H I+++ ++ DCL+F + ++ DN + I+ + + + K G F
Sbjct: 237 RSIHEGIASA--ILNSDCLVFDANIAHLFADNGNLGINVTISMDTAGEEKYAGLSS--FY 292
Query: 212 CLSPTSALNRFVVRKTRSAPVV 277
C ++A+ + + K S V+
Sbjct: 293 CRGASAAIVAYDITKESSLKVL 314
>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1410
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -2
Query: 416 TNPFLHVPQSTTDLIQVLGGKRVDGSRFNSSQLMHSRQIFNAI 288
T PF++ P++TT L+ ++ V+G RF++ + H I+ +
Sbjct: 1002 TPPFIYHPETTTHLLLIVPFFCVEGFRFSTFRGEHVDIIYGNV 1044
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 190 ILSLCFLMSLTYVSPQPVRCQEDTQCSSGY-YCEIALNICRECINCE 327
++ C++ SL V+ PVR + + +SG+ YC + L+ NCE
Sbjct: 153 VMLQCYVCSLFGVAHTPVRPKANLGYTSGFIYCIMPLSAKNFAKNCE 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,093
Number of Sequences: 59808
Number of extensions: 323073
Number of successful extensions: 813
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -