Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e02
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    29   4.5  
04_03_0644 + 18337757-18337947,18339113-18339344                       28   6.0  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   7.9  

>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +3

Query: 225 IKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQT 404
           I V  S +L+LL    ++ +    Y   C +++ G Y +NA++FN  +   +K Q L   
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN-PQAYNSKSQFLIFI 731

Query: 405 KIYRPDNN 428
            + + + N
Sbjct: 732 SLQQQEAN 739


>04_03_0644 + 18337757-18337947,18339113-18339344
          Length = 140

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 577 STTETFQRLRNKNLTTLN 630
           ++TE FQR+ N NLTT+N
Sbjct: 42  TSTERFQRMLNANLTTIN 59


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 279 AVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKL 377
           + SC  Y  +  L+++GE ++  ++F  A IKL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,859
Number of Sequences: 37544
Number of extensions: 224821
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)