Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e02
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    29   3.0  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   3.0  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 220 ILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTIL 342
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 562 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDD 678
           + K+   +E  +R+R ++ TT   +KY+ EL+   + +D
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIED 414


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 532 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 672
           K +T  +L+S+  K+ TTE    +   +   +  I+YDS    HY++
Sbjct: 83  KDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,505
Number of Sequences: 27780
Number of extensions: 219596
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)