Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0RW09 Cluster: Putative uncharacterized protein; n=1; ...    33   1.7  
UniRef50_Q1P7Y3 Cluster: Envelope glycoprotein; n=3457; Porcine ...    32   2.9  
UniRef50_Q49ZK5 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q21E03 Cluster: Histidine kinase, dimerisation and phos...    31   6.7  
UniRef50_Q1U9C6 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_A1ZMX5 Cluster: Saccharopine dehydrogenase; n=1; Micros...    30   8.9  
UniRef50_Q7RL40 Cluster: Acetate--CoA ligase-related; n=3; Plasm...    30   8.9  
UniRef50_Q4Q8J9 Cluster: Putative uncharacterized protein; n=3; ...    30   8.9  

>UniRef50_Q0RW09 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 193

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  RIQNSLPEAGLLKQVVHCTRTLHCLKTPLLMTNTYYK 157
           RI  S+P+AGL+  V H  R + CL  P +  N + +
Sbjct: 25  RISESVPDAGLVADVTHLLREIVCLLEPSVEENEWLR 61


>UniRef50_Q1P7Y3 Cluster: Envelope glycoprotein; n=3457; Porcine
           respiratory and reproductive syndrome virus|Rep:
           Envelope glycoprotein - Porcine reproductive and
           respiratory syndrome virus (PRRSV)
          Length = 206

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 218 MVVNITVCRINSRTDWFFDKFCCTVQTLNI 307
           ++ N+T+C +N  TDW  DKF   V+T  I
Sbjct: 47  LIYNLTLCELNG-TDWLVDKFDWAVETFVI 75


>UniRef50_Q49ZK5 Cluster: Putative uncharacterized protein; n=1;
           Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305|Rep: Putative uncharacterized protein -
           Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 /DSM 20229)
          Length = 249

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 299 MFVQYSKIYQRTSLYDC*SDRQLYLPPSSWLLHGSNPTMYRTFPT 165
           M +  + I+Q+ ++Y   + + +YL P   L++ +N  +Y+  PT
Sbjct: 1   MVISMNDIFQQGTVYQDDNSKTIYLTPEEPLVYDTNKWVYKRMPT 45


>UniRef50_Q21E03 Cluster: Histidine kinase, dimerisation and
           phosphoacceptor region; n=1; Saccharophagus degradans
           2-40|Rep: Histidine kinase, dimerisation and
           phosphoacceptor region - Saccharophagus degradans
           (strain 2-40 / ATCC 43961 / DSM 17024)
          Length = 380

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 116 CLKTPLLMTNTYYKQKL*GKFGT*WGYYHEVTMTMVVNITVCRINSRTDWFFDKF 280
           CL TP + T T     L G  G   GYY  + + + + + +  +   + WFFD F
Sbjct: 93  CLVTPKISTGT---STLIGYCGFFIGYYFRLAIGLALYVLLLTLFCLSSWFFDLF 144


>UniRef50_Q1U9C6 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus reuteri 100-23|Rep: Putative
           uncharacterized protein - Lactobacillus reuteri 100-23
          Length = 712

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 20  YEKQWYQLVRIQNSLPEAGLLKQVVHCTRTL 112
           Y  QWY + + +  L E G L   V CT TL
Sbjct: 69  YANQWYNIQQREPKLDEQGFLTMQVTCTHTL 99


>UniRef50_A1ZMX5 Cluster: Saccharopine dehydrogenase; n=1;
           Microscilla marina ATCC 23134|Rep: Saccharopine
           dehydrogenase - Microscilla marina ATCC 23134
          Length = 444

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +1

Query: 112 TLFKDTFAHDQYLLQTEVVGKVRYIVGLLP*SNHDDGGKYNCL 240
           TL  D + H Q    TE + KV  +V LLP S H +  KY CL
Sbjct: 53  TLVFDIYNHSQ---ATETIAKVDMVVSLLPASLHAEVAKY-CL 91


>UniRef50_Q7RL40 Cluster: Acetate--CoA ligase-related; n=3;
           Plasmodium (Vinckeia)|Rep: Acetate--CoA ligase-related -
           Plasmodium yoelii yoelii
          Length = 951

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 209 LLHGSNPTMYRTFPTTSVCSRYWS 138
           LL+G   T++ + PT   CSRYW+
Sbjct: 577 LLNGITTTLFSSIPTYPDCSRYWN 600


>UniRef50_Q4Q8J9 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 250

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 25  KTVVSACADSKLITRGGFT*AGCALHTDAT-LFKDTFAHDQYLLQTEV 165
           + V  + ADS ++ R G     CALH D T  + D    D  LL T++
Sbjct: 43  RLVTESAADSTVLLRDGSGSCYCALHGDITNRYPDVLTTDALLLFTDI 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,608,276
Number of Sequences: 1657284
Number of extensions: 6355234
Number of successful extensions: 13228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13227
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)