Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    24   7.1  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    24   7.1  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    24   7.1  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 235 SYIYH--HRHGYFMVVTPLCT 179
           SY+ H   +HG F+VV PL T
Sbjct: 415 SYLAHSLRQHGPFLVVVPLST 435


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 289 STAKFIKEPVCTTVNPT 239
           S  ++I+E + TTVNPT
Sbjct: 152 SVLRYIRENIDTTVNPT 168


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 293 VQYSKIYQRTSLYDC*SDRQLYLPPSSWLLHGSNP 189
           V YSK   +T   D  S+ Q Y+P     ++ +NP
Sbjct: 370 VSYSKSDMQTFFSDLVSNHQHYVPIIDAAIYAANP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,066
Number of Sequences: 5004
Number of extensions: 28865
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)