Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566...    27   2.9  
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789...    27   3.8  
10_08_0011 + 14088375-14089241                                         27   5.0  
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    27   5.0  
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686...    26   6.6  
09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939     26   8.7  
05_03_0051 + 7813903-7814077,7814192-7814302,7815028-7815317           26   8.7  
02_04_0470 - 23183925-23184743,23184929-23185153                       26   8.7  

>10_08_0414 +
           17755427-17756000,17756181-17756308,17756434-17756694,
           17756774-17757036,17758662-17759019
          Length = 527

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 172 KVRYIVGLLP*SNHDDGGKYNCLSD 246
           +V Y VG+L  +N DDG  ++CL +
Sbjct: 426 QVMYAVGILRSANPDDGCSHHCLQE 450


>04_03_0512 +
           16675940-16677193,16677325-16677853,16678920-16678999,
           16679450-16679533
          Length = 648

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 32  WYQLVRIQNSLPEAGLLKQVVHCTRTLHCL 121
           W + VR+   +  +GL+  VV+C   +H L
Sbjct: 150 WKESVRVFKEMSSSGLIPCVVNCNSFIHAL 179


>10_08_0011 + 14088375-14089241
          Length = 288

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 170 PTTSVCSRYWS*AKVSLNNVASVCNAQPA*VNPPLVMSFESAQADTTVF 24
           PT  V S YW  A +S  +VA+V  A P  V+  + +  +S Q    VF
Sbjct: 52  PTNGVFSPYWDTANLSPADVAAVKAAHPN-VSVMVGLGGDSVQDTAKVF 99


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 32  WYQLVRIQNSLPEAGLLKQVVHCTRTLHCLKTP 130
           WY + RI    P    L+ +  C  T HCL TP
Sbjct: 313 WYPIYRI----PTGPTLEDLDACFLTFHCLATP 341


>03_05_0026 +
           19966616-19966703,19967992-19968058,19968599-19968677,
           19969140-19969231,19969961-19970396,19973749-19974099
          Length = 370

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +2

Query: 101 TRTLHCLKTPLLMTNTYYKQKL*GKFGT*WGYYHEVTMTMVVNITVCRINSRTDW 265
           T  L C KT    TNT  +    G  G    Y   +T T    IT CR+     W
Sbjct: 18  TLGLLCRKTSKPSTNTLAQNLEDGGMGFHRYYQRRITRTGFRAITTCRLPLTNSW 72


>09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939
          Length = 212

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 141 PIPTTNRSCRESSVHSGV 194
           P PT  R CR S+ H GV
Sbjct: 51  PAPTQLRGCRRSNQHQGV 68


>05_03_0051 + 7813903-7814077,7814192-7814302,7815028-7815317
          Length = 191

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 173 KFGT*WGYYHEVTMTMVVNITVCRINSRTDWFFDKFCCTVQTLN 304
           KFG  W   + V + +   +   R     +W ++K C T+  +N
Sbjct: 116 KFGKYWEKDYNVVLLIAAVLDPSRRLFYLEWIYEKTCVTLSEVN 159


>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 233 LYLPPSSWLLHGSNPTMYRTFPTTSVCSRY 144
           ++ PP + LLHG  PT  + F T  +  R+
Sbjct: 19  IFNPPKNKLLHGPLPTSTKAFNTRPLRRRH 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,781
Number of Sequences: 37544
Number of extensions: 168575
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)