Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    29   1.2  
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     28   2.2  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)                 26   8.7  

>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 286  TAKFIKEPVCTTVNPTDSYIYHHRHGYFMVVTPLCT 179
            T++FI +P  + ++ + S + HH H Y +++  + T
Sbjct: 1219 TSEFILDPRLSPLSSSASSLRHHHHHYVIIIITIVT 1254


>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 221 PSSWLLHGSNPTMYRTFPTT-SVCSRYWS*AKVSLNNVA-SVCNAQ 90
           P   L    NP        T ++ SRYWS  K S+N+++ SV  AQ
Sbjct: 556 PKESLKRAPNPNAIAVLEKTIAIQSRYWSSVKRSINHISHSVVEAQ 601


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 325  DYIFTSYI*CLYSTAKFIKEPVCTTVN 245
            DY+FTS    L + A  I+E +CT+V+
Sbjct: 4115 DYVFTSTFGDLEANAYKIRERICTSVD 4141


>SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 719

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 85  AGCALHTDATLFKDTFAHDQYLLQTEVVGKVRYIVGLLP*SNHDDGGKYNCLSD 246
           A C  H D  + +DT AHD    + EV       V  +   N  DG   + L D
Sbjct: 329 AKCLKHKDELISRDTIAHDDSQSEGEVSFTNPDFVDSISDENDADGQIDHTLDD 382


>SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)
          Length = 429

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 41  LVRIQNSLPEAGLLKQVVHCTRTLHCLK 124
           L R+QN +PE  L K  V   + LH LK
Sbjct: 289 LKRLQNPIPEHILGKMAVAIVKALHYLK 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,603
Number of Sequences: 59808
Number of extensions: 218705
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)