Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    29   0.63 
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    28   1.9  
Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    26   5.8  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    26   5.8  

>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 336 FFFSTIYLLVIFNVCTVQQNLSKNQSVRLLIRQTVIF 226
           FF   +Y+ VIF +  ++++      +R+L++  VIF
Sbjct: 287 FFILFLYIAVIFKIFAMKKSTLNKNEIRVLVQAIVIF 323


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -1

Query: 318 YLLVIFNVCTVQQNLSKNQS----VRLLIRQTVIFTTIV-MVTSW 199
           YL +IF +C+ +     NQS    +R+LI+ T + T +  +V  W
Sbjct: 196 YLTIIFLICSKRNRNGSNQSRKNEIRILIQSTFVTTYMACLVVVW 240


>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 230 ITVCRINSRTDWFFDKFCCTVQTLNITSKYI 322
           +TV    ++T WF   FC +V  +N TS Y+
Sbjct: 102 LTVVNDVTKTFWFSAVFCKSVNFVNNTSVYV 132


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  RNMKNSGISLCGFKTHYQRRVYLSRLCIAHGRYIV*RHLCS*PIPTTNRSCR 170
           R   N G++ CG  +    R    R C  HG+ +V +   S   P  N SC+
Sbjct: 39  REQLNGGLT-CGGASRSSNRTLFCRKCEGHGQQVVLKGHAS-RCPFNNCSCK 88


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 328 FDYIFTSYI*CLYSTAKFIKEPVCTTVNPTDSYIYHHRHGYFMVVTPL 185
           +D+   +Y   L       K     + N  D  IY + HGY + V PL
Sbjct: 433 YDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYIYDHGYMLSVPPL 480


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 328 FDYIFTSYI*CLYSTAKFIKEPVCTTVNPTDSYIYHHRHGYFMVVTPL 185
           +D+   +Y   L       K     + N  D  IY + HGY + V PL
Sbjct: 433 YDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYIYDHGYMLSVPPL 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,795
Number of Sequences: 27780
Number of extensions: 166194
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)