Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12e01
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.75 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   9.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 158 VCSRYWS*AKVSLNNVASVCNAQ 90
           +C R W      +NNV SVC  Q
Sbjct: 129 MCDRLWVLDSGLINNVRSVCPPQ 151


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 3    LLNIRNMKNSGISLCGFKTHYQ 68
            LL+ ++  N G SL G+  HY+
Sbjct: 1421 LLHWKSGHNGGASLTGYTLHYR 1442



 Score = 21.4 bits (43), Expect = 3.0
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = +1

Query: 214 DDGGKYNCLSD 246
           +DGG+Y+C+++
Sbjct: 492 EDGGEYSCMAE 502


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 3    LLNIRNMKNSGISLCGFKTHYQ 68
            LL+ ++  N G SL G+  HY+
Sbjct: 1417 LLHWKSGHNGGASLTGYTLHYR 1438



 Score = 21.4 bits (43), Expect = 3.0
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = +1

Query: 214 DDGGKYNCLSD 246
           +DGG+Y+C+++
Sbjct: 492 EDGGEYSCMAE 502


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 188  WGYYHEVTMTMVVNITVCRINSRTDWFFDKFCCTVQ 295
            WGY+H V     ++ T  +    TD   DK C T++
Sbjct: 1677 WGYHHNVNKHCTIHRTQVK---ETD---DKICFTMR 1706


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 238 DSYIYHHRHGYFMVVT 191
           D+Y Y+ +H Y   +T
Sbjct: 89  DTYFYNGKHSYLHTIT 104


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 238 DSYIYHHRHGYFMVVT 191
           D+Y Y+ +H Y   +T
Sbjct: 121 DTYFYNGKHSYVHTIT 136


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 336 FFFSTIYLLVIFNVC 292
           FFF+   LLV+  VC
Sbjct: 150 FFFAATSLLVVAEVC 164


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 100 HTDATLFKDTFAHDQYL 150
           HT   + K   AHD+YL
Sbjct: 794 HTPNGIVKTWIAHDRYL 810


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 100 HTDATLFKDTF 132
           H DA +FKD F
Sbjct: 349 HIDARMFKDLF 359


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 239 RQLYLPPSSWLLHGSNPTMYRTFPTTSVCSRYW 141
           R+  + PS ++     P  Y  FP   +  R W
Sbjct: 325 REHRIIPSHYIEQIPAPVYYGNFPPRPIMVRPW 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,056
Number of Sequences: 438
Number of extensions: 2018
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)