Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d23
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 32 0.36
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 1.5
02_05_0891 - 32554355-32555305 30 1.9
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.6
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.4
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888... 29 4.5
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 28 5.9
07_01_0245 - 1803170-1803887,1803971-1804641 28 5.9
01_06_1510 - 37859664-37861319 28 7.8
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 496 KIDDLTQKLTVANADLA--EAXRS-LILFANEMIVARRDAETARQDCENARRETA 651
+ID+L KLT +AD+A EA + L+ A E A ++ T +D E+A RE+A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESA 298
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 166 AKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLIT 345
++D++ S K + R + GK T E+ Q+ H + +LH VL+T
Sbjct: 677 SRDVSRS-KDMRFFRPLHCLSHGKQMPTAEYTSQLPGHVDEGDQGVNAMQWLHKEPVLVT 735
Query: 346 KS--GVIQLIMKSKLPYAIELQEWLLEEVI 429
S G +I+K +P I + L +E+I
Sbjct: 736 VSGDGRFYIIVKVGVPTLIGVSHILSQEMI 765
>02_05_0891 - 32554355-32555305
Length = 316
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 264 PNPAPCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQI 383
PNPAP G P V +P A ++IW ST++EV+I
Sbjct: 112 PNPAPKQGAEGNG--PKVSSPKRQAFHRIW--STEDEVRI 147
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 567 FVCQRNDCGSTRR*NGSARLRKRAP 641
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 357 HARFGNEHCVWVQIQRVALLCHA 289
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>01_01_1119 +
8882481-8882687,8882793-8882933,8883024-8883143,
8883789-8883884,8884076-8884189
Length = 225
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 671 AMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRXASAKSALATVNFCVRSSILA 492
A LA A +R++ RAVSA+ A +SLA + S LA + + LA
Sbjct: 15 AFLLARGAFPKRSYDFCNRAVSAAHAAAAVSLACLSVADWSRPLSPLAAASSPPQMKALA 74
Query: 491 IT-SFVSISTAGAYL 450
+T S++ A YL
Sbjct: 75 VTLSYMVYDAACCYL 89
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +1
Query: 376 SKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEAX 555
+KLP ++ W L++ ++ PA +++N ++ + + L+QK+ D ++
Sbjct: 410 TKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLL-RFNILSQKMIKLALDASKTK 468
Query: 556 RSLILFANE 582
+ + NE
Sbjct: 469 ENFVYVMNE 477
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 328 VGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 209
VG + P PR GAG G H TS C C+ R + LP
Sbjct: 11 VGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 321 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 413
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,778,362
Number of Sequences: 37544
Number of extensions: 458888
Number of successful extensions: 1326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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