Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d23
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 36 0.035
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 36 0.035
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 36 0.035
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 36 0.035
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 36 0.035
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 36 0.035
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 6.9
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 6.9
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 6.9
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 27 9.2
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 27 9.2
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAE 609
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 341 MSTVCGCKYSGSPCFATLSGAWCWIWSACSNVDLY--LPSTWTRIARSQFTY 192
+S +CG + S P +G C I ACS+V+ + +T IAR F++
Sbjct: 18 ISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSH 69
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVAR---RDAETARQDC 627
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 628 ENARRETAQLANRM 669
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVAR---RDAETARQDC 627
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 628 ENARRETAQLANRM 669
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 457 APAVEMDTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVAR---RDAETARQDC 627
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 628 ENARRETAQLANRM 669
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 475 DTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAETARQDCENARRETAQ 654
+ N +IAK+ L ++LT NA+L E E+ R + + + A RE +
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEE----------ELEAERNSRQKSDRSRSEAERELEE 1158
Query: 655 LANRM 669
L R+
Sbjct: 1159 LTERL 1163
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 475 DTNDVIAKIDDLTQKLTVANADLAEAXRSLILFANEMIVARRDAETARQDCENARRETAQ 654
+ N +IAK+ L ++LT NA+L E E+ R + + + A RE +
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEE----------ELEAERNSRQKSDRSRSEAERELEE 1158
Query: 655 LANRM 669
L R+
Sbjct: 1159 LTERL 1163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,427
Number of Sequences: 27780
Number of extensions: 362126
Number of successful extensions: 959
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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