Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d22
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   0.47 
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    28   1.1  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   1.4  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   2.5  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   3.3  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.3  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   7.6  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 518 SFKDMEEGKCYDISLNYVKTKFSQMIQ 598
           +FK+ +EG+ YD SL +VKT FS  IQ
Sbjct: 844 AFKETQEGENYDTSL-FVKTAFSFEIQ 869


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = -3

Query: 415 TINSFVIFSNLLGAISHSHAFYKRLTATFSRKKSFGRH-IAVVVNMWESIRWQILNGDEI 239
           TI    +F+N+ G  S ++  YKR   +  R    G + I     M  + +   + G E 
Sbjct: 174 TIQQEYLFNNVFGMESKNYDIYKRSVKSVVRNVFSGYNGIVFAYGMTGTGKTYSMQGTEN 233

Query: 238 EVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFEN 122
           E  P    LA  +L   V NN+  D+TF+      +  N
Sbjct: 234 E--PGIIPLAMNDLFEMVENNSD-DDTFQIRISYLEIYN 269


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 YYYTFRIMSDNKIQEYYGDSQS 520
           Y+Y   I  +N IQE+Y D +S
Sbjct: 623 YFYQLEIAEENAIQEWYSDPRS 644


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 122 IFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 286
           +++ G+++  SKRV K   V  + N      +   W H D   ++YLP +++ H+
Sbjct: 174 MYEEGWIEFESKRVAKS--VAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 448  IDTQRHFAH*FTI-NSFVIFSNLLGAISHSHAFYKRLTATFSRKKSFGRHIAVV 290
            ID Q H +   T+ NS V+ +NL    +  H+F+K   + FS K   GR+  VV
Sbjct: 1435 IDLQAHESFITTLLNSAVVEANLENQFNEVHSFWKN--SYFSFKSFKGRNYIVV 1486


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 409 NSFVIFSNLLGAISHSHAFYKRLTATFSRKKSFGRHIAVVV 287
           +S++ +S++   +SHSH  + R+    +  K+F   I+ +V
Sbjct: 621 DSYITYSDIFSPLSHSHKDWFRIHTEENSSKNFYEIISEIV 661


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = +2

Query: 326 GESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSD------N 487
           G S+ +P++ R    N   +  E YK+    ++GK   +++N+   T R +S       N
Sbjct: 314 GSSNSKPVVVRPKKRNILTEELEKYKKSKKVVLGKRK-NLENDEESTLRALSSFQSKIRN 372

Query: 488 KIQEYYGDSQSFKDMEEGKCYDISLNYVKTKFSQMIQINE 607
              E   DSQ    +E+  C   SL+ V   FS   ++ E
Sbjct: 373 AEDEDVMDSQYGSKIEDTPC---SLHNVPGCFSCFDRLGE 409


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -3

Query: 280  WESIRWQILNGDEIEVSPEHRSLAWRELIINVANN------TPLDNTFRTMFQKADF 128
            ++S++WQ +  DE +      S  W+ L+     N      TP+ NT + ++    F
Sbjct: 966  FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 391 SNLLGAISHSHAFYKRLTATFSRKKSFGRHIAVVVNMWESIRWQILN 251
           S ++ A+  S   + R+ A    + +   H+ + + +W  IR Q+LN
Sbjct: 758 SAIIDALKTSRQIFHRMYAYVVYRIALSLHLEIFLGLWLIIRNQLLN 804


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 217 SLAWRELIINVANNTPLDNTFRTMFQKADFEN 122
           +L W+E + NV+NNT L      +    +F N
Sbjct: 225 ALEWKEKVYNVSNNTLLSEAHYKLALALEFTN 256


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 202 ELIIN-VANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNER 56
           +L+ N    N PL+++  +     D ++ + +TP+V+ + TK   +  +R
Sbjct: 520 QLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKR 569


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 277 ESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIV 98
           ESI   I   ++ +   E      R   I + N   LDN F +   +    N+    P++
Sbjct: 771 ESISMAIKYREQEQSGLEFLVKGKRSKNIFLTNLVKLDNPFNSFGDEQLDYNYRKRIPMI 830

Query: 97  YNLKTK 80
           Y+L+TK
Sbjct: 831 YDLRTK 836


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 166 DN-TFRTMFQKADFENF-DYNTPIVYNLKTKTLTMYNERIRAALN-RPARFNDQTTNV 2
           DN T  +   +A + N+ DY+   +  +K K L  YN+   +A++  P   +D++  V
Sbjct: 762 DNYTLLSKHDRAMYNNYADYSPDKIKEIKEKELNTYNDYFNSAISENPTLKSDRSEKV 819


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 278 PHIDNNSNMATKRFFSGESSGEPLIKRMAMANSPKKIRE 394
           P    NS++A+    S   SG+ L   M+ A SP K  E
Sbjct: 85  PFPPKNSSLASPSKISESISGDRLYNHMSSAPSPNKKEE 123


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 391 SNLLGAISHSHAFYKRLTATFSRKKSFGRHIAVVVNMWESIRWQILN 251
           S ++ A+  S   + R+ +    + +   H+ + + +W  IR Q+LN
Sbjct: 670 SAIIDALKTSRQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQLLN 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,347
Number of Sequences: 5004
Number of extensions: 58963
Number of successful extensions: 193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)