Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d19
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 241 RSPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNT 372
           R PKK   AT+VY++    +T +G       S+    ++F+  T
Sbjct: 52  RPPKKDGQATVVYFH----VTVMGLDSIDENSMTYAADIFFAQT 91


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 397 KCPIEFTYPETDMQSACSALLKNRNGQSVPPP 492
           K PIEFT    + +     +LK    QS P P
Sbjct: 590 KNPIEFTDLSNERKYEDVCVLKTDTNQSCPSP 621


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 43  VCISDRFFAFPHNLVEP 93
           +C+SD  +  PHN   P
Sbjct: 296 LCMSDLHWQLPHNSTNP 312


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  FCVSSQFGGTAKRRRQQINR 122
           FC     GG++K+R+  + R
Sbjct: 94  FCAEIAHGGSSKKRKSIVER 113


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 545 KSWWKAMTFYYV 580
           K WWK   FY V
Sbjct: 22  KGWWKNAIFYQV 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,524
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)