Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d18
(117 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 20 3.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 20 3.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 20 3.2
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 19 4.2
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 19 4.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 5.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 5.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 19 7.3
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 68 SEK*IDYRYFRP 33
SE DYRYF P
Sbjct: 276 SENPADYRYFCP 287
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 68 SEK*IDYRYFRP 33
SE DYRYF P
Sbjct: 276 SENPADYRYFCP 287
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 68 SEK*IDYRYFRP 33
SE DYRYF P
Sbjct: 276 SENPADYRYFCP 287
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 19.4 bits (38), Expect = 4.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 112 FFNYVYLFIYLFNTIVRNK 56
FFN Y YLF +N+
Sbjct: 429 FFNLAYWSTYLFREEEQNE 447
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 19.4 bits (38), Expect = 4.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 112 FFNYVYLFIYLFNTIVRNK 56
FFN Y YLF +N+
Sbjct: 429 FFNLAYWSTYLFREEEQNE 447
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 155 YQTNVVVTHNGSCL 168
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 155 YQTNVVVTHNGSCL 168
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHDGSCL 100
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHDGSCL 100
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHDGSCL 100
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHDGSCL 100
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHDGSCL 100
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -1
Query: 42 FQTRAIKTHXHDCL 1
+QT + TH CL
Sbjct: 87 YQTSVVVTHNGSCL 100
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,468
Number of Sequences: 438
Number of extensions: 126
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 19
effective length of database: 138,021
effective search space used: 2622399
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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