Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d16
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.7  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 137 IDNTNTIRYANNNEALSPNCK 75
           I N N  +Y  NN   + NCK
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 137 IDNTNTIRYANNNEALSPNCK 75
           I N N  +Y  NN   + NCK
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 137 IDNTNTIRYANNNEALSPNCK 75
           I N N  +Y  NN   + NCK
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 137 IDNTNTIRYANNNEALSPNCK 75
           I N N  +Y  NN   + NCK
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 529 NAEILSQNCVYENLYKK 579
           +AE++++ C+ E LYK+
Sbjct: 318 HAEVVARRCLCEYLYKQ 334


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 128 TNTIRYANNNEALSPN 81
           T+TI+Y N+N  + P+
Sbjct: 254 TDTIKYRNDNNIVRPD 269


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 258 LFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYGKRD 380
           ++C +  +  E   R+ KH  KF   K  LR  +++ G ++
Sbjct: 161 IYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKE 201


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 221 IIGIDRLITDRFPSISSKNAYLLSATPIIDNTNTIRYANNNEALS 87
           +IG    IT     I  + + L    P + N+N+I++ ++N   S
Sbjct: 190 LIGPSIRITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,803
Number of Sequences: 438
Number of extensions: 5131
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)