Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d12
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.058
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.058
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.71 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.71 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.71 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 555  PITWNELEYIGGNDSNLIPNPGD 623
            PI+  E  ++GGN  N++P  GD
Sbjct: 1855 PISVAETTFVGGNQGNVVPGNGD 1877


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 555  PITWNELEYIGGNDSNLIPNPGD 623
            PI+  E  ++GGN  N++P  GD
Sbjct: 1851 PISVAETTFVGGNQGNVVPGNGD 1873


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 40  KLEWVDYN-LQWNESEYGGVKDLRITPN 66


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 KSNWDRRNPITWNELEYIGGNDSNLIPN 614
           K  W   N + WNE EY G  D  + PN
Sbjct: 108 KLEWVDYN-LQWNESEYGGVKDLRITPN 134


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 510  YFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGD--SLCD 635
            Y +  +  +  D+R P   +EL YI   +  L P PG   + CD
Sbjct: 1622 YQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCD 1665


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +3

Query: 408 PLNN-WKPDTLYLNLYQPVY 464
           P N  W+PDT+  N   P Y
Sbjct: 83  PYNRVWRPDTILYNNADPQY 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 415 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 323
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 415 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 323
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 501 EPSYFEVFITKSNWDRR 551
           EP Y+ + + K NW ++
Sbjct: 209 EPIYYNLTMVKLNWPKK 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,276
Number of Sequences: 438
Number of extensions: 5311
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)