Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d07
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0256 + 13528331-13528765                                        163   2e-40
02_02_0566 + 11567415-11567843                                        160   1e-39
03_01_0098 - 773958-774144,775776-775902,776013-776088,776208-77...    34   0.11 
02_05_1082 - 33976038-33978035                                         33   0.19 
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    30   2.3  
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898...    29   5.3  
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360     28   9.3  

>06_02_0256 + 13528331-13528765
          Length = 144

 Score =  163 bits (395), Expect = 2e-40
 Identities = 77/103 (74%), Positives = 86/103 (83%)
 Frame = +2

Query: 167 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINXGDIILIGLRDYQ 346
           LVFKEDGQEYAQVT+MLGNGR EA+C DG KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 347 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 475
           D KADVILKY  DEAR LK YGE P+T+R+NE V   VDG ++
Sbjct: 86  DDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGPED 126


>02_02_0566 + 11567415-11567843
          Length = 142

 Score =  160 bits (388), Expect = 1e-39
 Identities = 75/104 (72%), Positives = 81/104 (77%)
 Frame = +2

Query: 167 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINXGDIILIGLRDYQ 346
           LVFKEDGQEYAQV +MLGNGR EA C DG KRLCHIRGK+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 347 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 478
           D KADVILKY  DEAR LK YGE P+ VR+NE VV   D    D
Sbjct: 86  DDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAAAHD 129


>03_01_0098 -
           773958-774144,775776-775902,776013-776088,776208-776321
          Length = 167

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 182 DGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINXGDIILI 328
           +G+   QV  + G+  +E M   G+K L     K +K  WI  G+ +++
Sbjct: 21  EGESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVV 69


>02_05_1082 - 33976038-33978035
          Length = 665

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 368 LKYTPDEARNLKTYGEFPETVRINETVV 451
           +K+ PD+ ++LK YG++P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 293 KVWINXGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 469
           KV +  GD++   LR      AD+  +      RN ++Y E  + +VRI  T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302

Query: 470 D 472
           D
Sbjct: 303 D 303


>07_03_1604 -
           28089032-28089079,28089161-28089371,28089484-28089853,
           28090034-28090199
          Length = 264

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 211 LCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFS 116
           +  L ++L VF+  Q   F+F  V SSPP+FS
Sbjct: 1   MAPLLLILLVFMPCQTMLFTFDRVTSSPPLFS 32


>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
          Length = 425

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +2

Query: 167 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINXGDIILIGLRDYQ 346
           +V     +++A + K L  GR+   C +  +   H+R  ++K VW    D +LI      
Sbjct: 107 MVILHGDRKWATIAKSLP-GRIGKQCRE--RWTNHLRPDIKKDVWTEEDDRMLIEAHKTY 163

Query: 347 DAKADVILKYTPDEARN 397
             +  VI +  P  + N
Sbjct: 164 GNRWSVIARCLPGRSEN 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,796,960
Number of Sequences: 37544
Number of extensions: 293381
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)