Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d06
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   4.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   6.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   8.5  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 650  TLLEKLMKQELRPYRNSGEVY-CTDFEHIKRALETCLXPLLAK-TNP 784
            ++L+KL+ Q+    + +   Y  T FEHI   LE    P+LA  +NP
Sbjct: 943  SVLKKLLYQQKHGSQKTNVYYNATHFEHIGPMLEATWMPILAALSNP 989


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 520 VQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLS 419
           +Q   G I+  LD   +   CR+G+L + QRRLS
Sbjct: 1   MQTYTGIIKTPLDAIILFEACRIGLLPRVQRRLS 34


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 787 ERISFXEQWGQARLERALDVLEIRAVDLAAVAVRSQLLFH 668
           E+IS  + W Q + E +L +LE   +D   V      L+H
Sbjct: 387 EQISALQYWKQGQYENSLSLLETSKIDPRVVISLYPDLYH 426


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 371 ELQNWFYEHVLPQCTARQSALSLLQDA 451
           E+QNW++EH    C     A +  Q+A
Sbjct: 190 EIQNWYFEHHTELCLLIHHAEARAQEA 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,294
Number of Sequences: 5004
Number of extensions: 61234
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)