BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d04
(692 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7JVI3 Cluster: LD23767p; n=8; Endopterygota|Rep: LD237... 289 4e-77
UniRef50_UPI00015B4AFB Cluster: PREDICTED: similar to dendritic ... 287 2e-76
UniRef50_O60735 Cluster: PCI domain-containing protein 1; n=30; ... 158 1e-37
UniRef50_Q4V8V4 Cluster: Zgc:114126; n=1; Danio rerio|Rep: Zgc:1... 142 1e-32
UniRef50_A7SPX9 Cluster: Predicted protein; n=1; Nematostella ve... 114 2e-24
UniRef50_UPI0000E49149 Cluster: PREDICTED: similar to dendritic ... 82 1e-14
UniRef50_Q94261 Cluster: Probable COP9 signalosome complex subun... 75 2e-12
UniRef50_Q54KZ8 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_A2RAA2 Cluster: Contig An18c0070, complete genome; n=1;... 45 0.002
UniRef50_Q5BX61 Cluster: SJCHGC01182 protein; n=1; Schistosoma j... 36 1.2
UniRef50_A7AT79 Cluster: PCI domain containing protein; n=1; Bab... 35 1.6
UniRef50_Q9I8F1 Cluster: CD45 precursor; n=4; Tetraodontidae|Rep... 35 2.2
UniRef50_Q4N2F3 Cluster: Putative uncharacterized protein; n=2; ... 34 2.9
UniRef50_Q6CCP5 Cluster: Similar to KLLA0F25740g Kluyveromyces l... 34 3.8
UniRef50_Q07V28 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6
UniRef50_A6KWM8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6
UniRef50_UPI00015B5CA1 Cluster: PREDICTED: similar to RH33661p; ... 33 8.8
>UniRef50_Q7JVI3 Cluster: LD23767p; n=8; Endopterygota|Rep: LD23767p
- Drosophila melanogaster (Fruit fly)
Length = 387
Score = 289 bits (709), Expect = 4e-77
Identities = 132/201 (65%), Positives = 165/201 (82%)
Frame = +1
Query: 88 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES 267
M VF+D+SL++Q ELR+YFK LGAEIS EKS KG+EDDLHKI+GVCD CFK+ S
Sbjct: 1 MTSHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPS 60
Query: 268 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 447
I+ ILNSIVSIM++IPL+RGEN++LA+ +++TKAP LG V LQSLWRL+NNL+ SP
Sbjct: 61 QIDGILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASP 120
Query: 448 LRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSE 627
LRYHVYYH++++A + V EVF+GV+QL+ +FANCPPS+EQMQKLYRLLH V KD N E
Sbjct: 121 LRYHVYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKDTNLE 180
Query: 628 LAAKVMIELLGTYTDENASYA 690
L++KVMIELLGTYT +NA A
Sbjct: 181 LSSKVMIELLGTYTADNACVA 201
>UniRef50_UPI00015B4AFB Cluster: PREDICTED: similar to dendritic
cell protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to dendritic cell protein - Nasonia vitripennis
Length = 392
Score = 287 bits (703), Expect = 2e-76
Identities = 134/202 (66%), Positives = 167/202 (82%), Gaps = 1/202 (0%)
Frame = +1
Query: 88 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES 267
MQGPAVFMD + EDQA ELR YFKSLGAEISEEKSP+GIEDDLHKI+GVCDACFKE +E+
Sbjct: 1 MQGPAVFMDGTTEDQAQELRIYFKSLGAEISEEKSPRGIEDDLHKIIGVCDACFKEGNEA 60
Query: 268 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 447
+IE ILN IVSIM+ +P ER EN++LAF ++LTKAPG KLG+V L++LW L+ +L +S
Sbjct: 61 EIETILNDIVSIMILVPTERAENIVLAFCEKLTKAPGYKLGLVCLKALWLLFQSLPEDSS 120
Query: 448 LRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKD-QNS 624
+RYHVYYH++++A V V+ V+ GV+QL+++FA CPP+NEQMQKL RLLH+VL +
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYNGVDQLKQQFATCPPANEQMQKLLRLLHEVLLGCKQG 180
Query: 625 ELAAKVMIELLGTYTDENASYA 690
E AA VM+ELLGTYT ENAS A
Sbjct: 181 EQAAAVMVELLGTYTSENASAA 202
>UniRef50_O60735 Cluster: PCI domain-containing protein 1; n=30;
Euteleostomi|Rep: PCI domain-containing protein 1 - Homo
sapiens (Human)
Length = 374
Score = 158 bits (384), Expect = 1e-37
Identities = 85/202 (42%), Positives = 133/202 (65%), Gaps = 1/202 (0%)
Frame = +1
Query: 88 MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES 267
M PA F+DIS EDQA ELR Y KS GAEISEE S G+ DL +I+ CD C KE +
Sbjct: 1 MSVPA-FIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDK 58
Query: 268 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 447
D+E+++NS+VS+++ + ++ E LI + ++L K + + LQ L L++ ++ N+P
Sbjct: 59 DVESVVNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTP 118
Query: 448 LRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKD-QNS 624
+RY VY +IE+ A G ++ + T ++Q+RK ++ + E+ L RLL++ L D + S
Sbjct: 119 VRYTVYCSLIEVVASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALADCKKS 178
Query: 625 ELAAKVMIELLGTYTDENASYA 690
+ A+KVM+ELLG+YT++NAS A
Sbjct: 179 DAASKVMVELLGSYTEDNASQA 200
>UniRef50_Q4V8V4 Cluster: Zgc:114126; n=1; Danio rerio|Rep:
Zgc:114126 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 370
Score = 142 bits (343), Expect = 1e-32
Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 1/179 (0%)
Frame = +1
Query: 157 KSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGEN 336
+SLGA+I + ++DDL I+ C CF+E E ++EA LNSI S++V + + RGE+
Sbjct: 2 QSLGADIPDSSGV--LDDDLTHIIESCHFCFQENKELEMEAALNSITSLLVCMDMNRGES 59
Query: 337 LILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREVF 516
L+ F ++LT+ KL + L+ L+ LY L+ S RY VY +I LA R G + VF
Sbjct: 60 LVKKFCKKLTREQSKKLEISCLKVLYLLYQGLQTQSTPRYEVYCELIPLAGRTGQIMSVF 119
Query: 517 TGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQNSELAAKVMIELLGTYTDENASYA 690
T L+K F + +++Q LYRL+H+ +LK + SE AAKV++ELLGTYT ENAS A
Sbjct: 120 TDTPTLKKSFPRL--TIDKLQHLYRLIHEALLKCKESEKAAKVIMELLGTYTPENASQA 176
>UniRef50_A7SPX9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 379
Score = 114 bits (275), Expect = 2e-24
Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 3/198 (1%)
Frame = +1
Query: 106 FMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL 285
F+D ++QA E+R + K GA++ EE S ++D+L +I+ C CFKE +E +E+++
Sbjct: 8 FIDAEEQEQAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKEDAE--LESVM 64
Query: 286 NSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVA--LQSLWRLYNNLEPNSPLRYH 459
NSI+S+++ +P +R E + + + A L+ L L++ L P+R+
Sbjct: 65 NSILSLVLVVPEKRNELIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHE 124
Query: 460 VYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQN-SELAA 636
VY + +AA+ V ++ T +E ++ +Q ++++RLLH L D+ SE A+
Sbjct: 125 VYCTQLTIAAKASLVDDIPTELELVKGWLGLWDVDADQRRQVFRLLHGALHDEKRSEEAS 184
Query: 637 KVMIELLGTYTDENASYA 690
KVMIELL TYTDENAS A
Sbjct: 185 KVMIELLSTYTDENASAA 202
>UniRef50_UPI0000E49149 Cluster: PREDICTED: similar to dendritic
cell protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to dendritic cell protein -
Strongylocentrotus purpuratus
Length = 429
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/153 (26%), Positives = 85/153 (55%)
Frame = +1
Query: 190 SPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTK 369
S +G+E DL ++ +K P ++IE + NSI+S+++ P E E L+ S+ +TK
Sbjct: 2 SEEGLELDLEAVIDNVGVVWKLPDVNEIEGVFNSILSLLIYFPQETMEKLVPKLSEHITK 61
Query: 370 APGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFA 549
+ + + ++ L L++ + +PL YHVY ++ +AA+ + +V T +++++K
Sbjct: 62 SGTAEQSYIRIKILNSLFHGVGETNPLAYHVYTGMLRVAAKYENIDQVVTDLDKVKKWTI 121
Query: 550 NCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMI 648
+ +++ +YRLL++ LK+ L + +
Sbjct: 122 QWELNRDRINNVYRLLYEGLKESKHGLLESLQL 154
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 613 DQNSELAAKVMIELLGTYTDENASYA 690
D N E A+ VM+ELLGTYT++NAS A
Sbjct: 228 DGNDE-ASVVMVELLGTYTEDNASQA 252
>UniRef50_Q94261 Cluster: Probable COP9 signalosome complex subunit
7; n=2; Caenorhabditis|Rep: Probable COP9 signalosome
complex subunit 7 - Caenorhabditis elegans
Length = 390
Score = 74.5 bits (175), Expect = 2e-12
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Frame = +1
Query: 103 VFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES-DIEA 279
VF I Q ELR+Y L S + P G + ++ +C PS S D++
Sbjct: 9 VFAYIDDVKQLQELRQY---LNKHDSVKLDPNGPSETAQNMIEICSTLNVLPSWSQDVDL 65
Query: 280 ILNSIVSIMVSIPLERGENLILAFSQRLT----KAPG-PKLGMVALQSLWRLYNNLEPNS 444
+LNSI S++V +P E+ E ++ +F + + K G +A++ L LY
Sbjct: 66 VLNSISSLIVVVPGEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFH 125
Query: 445 PLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQN 621
++ ++ ++++ A + E+ +E L+ F E +++ R +H+ +L DQ
Sbjct: 126 TVQEKIFKALVDMCAEARLIGELECNLETLQDRFNTWKTPVEGQREILRAVHRALLVDQR 185
Query: 622 SELAAKVMIELLGTYTDENASYA 690
+ AAKVM LLGTYT+++A+ A
Sbjct: 186 VDQAAKVMTALLGTYTEKDAAAA 208
>UniRef50_Q54KZ8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 401
Score = 60.5 bits (140), Expect = 4e-08
Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Frame = +1
Query: 214 LHKIVG-VCDACFKE--PSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPK 384
L KIV + FKE S+ DIE N I++I+ + E N++ + A +
Sbjct: 50 LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTE 109
Query: 385 LGMVALQSLWRLYNNLEPNSPLRYHVYYHVIELAA---RVGFVREVFTGVEQLRKEFANC 555
+ ++ L L+N+ +P S RY +++ +++LA+ + FV+ T ++ +++
Sbjct: 110 NSQLKIKILTNLFNSFQPKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWN-- 167
Query: 556 PPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYA 690
S +Q +KLY+L+ + K++ L+ + +++ L T+T E++ A
Sbjct: 168 -VSIQQKRKLYKLISNIFKEKQRMLSHQFLVKYLQTFTKEDSQEA 211
>UniRef50_A2RAA2 Cluster: Contig An18c0070, complete genome; n=1;
Aspergillus niger|Rep: Contig An18c0070, complete genome
- Aspergillus niger
Length = 1137
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = +1
Query: 244 CFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLY 423
C ++ IE+ N++ ++ +PL+ + +I + + G + +L ++
Sbjct: 744 CISRSEDTSIESSSNAVSELLPLLPLDEQDKMIQGWFSHIHTTWNLPTGRGQITALGTVF 803
Query: 424 NNLEPNSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKE-FANCPPSNEQMQKLYRLLH 600
++ NSPLR + +IE A + + + V L + +++ M L R L+
Sbjct: 804 KRIDKNSPLRKSIIDSIIECAEKEELIEKRVAAVRSLATGILPHIDVTDDIMNHLVRFLN 863
Query: 601 QVLKDQNSELAAKVMIELL 657
D+ ++ + + +E +
Sbjct: 864 DYTTDRRGDIGSLIRLEAI 882
>UniRef50_Q5BX61 Cluster: SJCHGC01182 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC01182 protein - Schistosoma
japonicum (Blood fluke)
Length = 568
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -1
Query: 350 NAKIRFSPLSNGIETIIETILFRMASISDSLGSLKQASQTPTILC--RSSSMPLGDFSSE 177
NA+IR ++ E + I ++ S+ DS+G + Q S+ T +C +S +P+ D S +
Sbjct: 275 NARIRIRLVTGFDEALSNCIQSQLTSLHDSIGCISQDSRASTEICPQLTSEVPIPDNSDQ 334
Query: 176 ISA 168
+ A
Sbjct: 335 VGA 337
>UniRef50_A7AT79 Cluster: PCI domain containing protein; n=1;
Babesia bovis|Rep: PCI domain containing protein -
Babesia bovis
Length = 311
Score = 35.1 bits (77), Expect = 1.6
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 400 LQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQ 579
L+ + LYN+++ PLR VY ++E A+R + +++L + + +
Sbjct: 36 LKLMQMLYNSVDVTLPLRVVVYVEILEFASRHDLFHTLLPVIQKLDEWMKDWVIDKKTRI 95
Query: 580 KLYRLLHQVL-KDQNSELA 633
+YR++ + L K NSEL+
Sbjct: 96 NIYRIISEQLDKMGNSELS 114
>UniRef50_Q9I8F1 Cluster: CD45 precursor; n=4; Tetraodontidae|Rep:
CD45 precursor - Fugu rubripes (Japanese pufferfish)
(Takifugu rubripes)
Length = 1246
Score = 34.7 bits (76), Expect = 2.2
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 508 EVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSEL-AAKVMIELLGTYTDENAS 684
+VF V+ LRKE PS EQ Q LY L V QN ++ AA+ ++++ ++ AS
Sbjct: 1155 DVFQVVKTLRKERQGMCPSLEQYQFLYDALEVVYPVQNGDVKAAQNSVQIVNETAEQQAS 1214
>UniRef50_Q4N2F3 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 450
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 400 LQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQ 579
L+ L LYN++E PLR VY ++E AA+ + V+++ + + +
Sbjct: 171 LRLLQMLYNSVESTLPLRVDVYIAILEFAAKHNIFHTLIPIVKEVDEWMVDWSIDKKTKI 230
Query: 580 KLYRLLHQVLKDQN-SELAAK 639
++Y ++ + L N ++LA K
Sbjct: 231 RIYHIIAEELDKLNRADLAYK 251
>UniRef50_Q6CCP5 Cluster: Similar to KLLA0F25740g Kluyveromyces
lactis IPF 168.1; n=1; Yarrowia lipolytica|Rep: Similar
to KLLA0F25740g Kluyveromyces lactis IPF 168.1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 523
Score = 33.9 bits (74), Expect = 3.8
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +1
Query: 526 EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYA 690
E+LRKE A C +E++ +L + Q L+D+ + ++ +M ++ TD+ A A
Sbjct: 427 ERLRKELAKCQSDSEKLSQLSKTFRQSLQDEKA-ISGAMMAKVKKLQTDKMAKEA 480
>UniRef50_Q07V28 Cluster: Putative uncharacterized protein; n=1;
Rhodopseudomonas palustris BisA53|Rep: Putative
uncharacterized protein - Rhodopseudomonas palustris
(strain BisA53)
Length = 758
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 102 CVYGHIPGRSGTRTEKIF*EPWRRDFRRKIT*GH 203
CV G+ +G++ E+IF EP R +FRRK G+
Sbjct: 289 CVEGYFTEANGSKPEQIFDEPLRFEFRRKALLGN 322
>UniRef50_A6KWM8 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 447
Score = 33.1 bits (72), Expect = 6.6
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +1
Query: 421 YNNLEP---NSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYR 591
Y+NL+ +P+ +V Y++ + +AR + +E GVE + + F PS+ M +LY
Sbjct: 271 YDNLKEAYQKNPMDVNVLYYLAKASARTSWKKE---GVEYMEEAFRIAVPSDSMMVRLYD 327
Query: 592 LLHQVLKDQNSELAAKVMIELLGTYTDENA 681
L + +E L YT +N+
Sbjct: 328 GLVECYDYAGDTKKEVEALEKLYIYTKKNS 357
>UniRef50_UPI00015B5CA1 Cluster: PREDICTED: similar to RH33661p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
RH33661p - Nasonia vitripennis
Length = 121
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 472 VIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQ-KLYRLLHQVLKDQNSEL 630
++E + G V + TG+E L KE ++ PPS Q + KL+R Q +Q E+
Sbjct: 33 LLERCSSSGLVNGLLTGIENLGKENSSRPPSLFQCRIKLFREWSQNWSEQEKEM 86
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,500,831
Number of Sequences: 1657284
Number of extensions: 11058592
Number of successful extensions: 32989
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 32032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32977
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -