Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d04
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    30   2.0  
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    29   4.6  
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741...    29   4.6  

>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 40  CL*IINKRIQFEK-GI-KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 210
           C  I++ RI  ++ GI K+QG  + +D+SL+   L      K  G E  EE   K +ED
Sbjct: 431 CGEIVDLRIMKDQNGISKLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKALED 489


>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +1

Query: 178 SEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQ 357
           +E+ +P G+E  LH    +C A     SE  + A L  +    VS+ L RG+  +   +Q
Sbjct: 283 TEQNNPVGLEVQLHITEALCPAL----SEPGLRAFLRFMTG--VSVCLNRGD--VDPKAQ 334

Query: 358 RLTKAPGPKLGMVALQSLWRLYNNLE 435
           +L +A G  L  + +  ++    + E
Sbjct: 335 QLAEAAGSSLVSIIVDHIFLCIKDAE 360


>03_06_0116 +
           31773295-31773603,31773800-31773946,31774080-31774158,
           31777558-31778180
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 346 AFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVY 465
           AFS+R  K   PK   + L   W L+ +  P   +R H+Y
Sbjct: 227 AFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,848
Number of Sequences: 37544
Number of extensions: 298596
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)