Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d04
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p pro...   289   2e-78
AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA...   289   2e-78
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    29   4.5  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    29   4.5  

>AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p
           protein.
          Length = 387

 Score =  289 bits (709), Expect = 2e-78
 Identities = 132/201 (65%), Positives = 165/201 (82%)
 Frame = +1

Query: 88  MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES 267
           M    VF+D+SL++Q  ELR+YFK LGAEIS EKS KG+EDDLHKI+GVCD CFK+   S
Sbjct: 1   MTSHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPS 60

Query: 268 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 447
            I+ ILNSIVSIM++IPL+RGEN++LA+ +++TKAP   LG V LQSLWRL+NNL+  SP
Sbjct: 61  QIDGILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASP 120

Query: 448 LRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSE 627
           LRYHVYYH++++A +   V EVF+GV+QL+ +FANCPPS+EQMQKLYRLLH V KD N E
Sbjct: 121 LRYHVYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKDTNLE 180

Query: 628 LAAKVMIELLGTYTDENASYA 690
           L++KVMIELLGTYT +NA  A
Sbjct: 181 LSSKVMIELLGTYTADNACVA 201


>AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA
           protein.
          Length = 387

 Score =  289 bits (709), Expect = 2e-78
 Identities = 132/201 (65%), Positives = 165/201 (82%)
 Frame = +1

Query: 88  MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES 267
           M    VF+D+SL++Q  ELR+YFK LGAEIS EKS KG+EDDLHKI+GVCD CFK+   S
Sbjct: 1   MTSHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPS 60

Query: 268 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 447
            I+ ILNSIVSIM++IPL+RGEN++LA+ +++TKAP   LG V LQSLWRL+NNL+  SP
Sbjct: 61  QIDGILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASP 120

Query: 448 LRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSE 627
           LRYHVYYH++++A +   V EVF+GV+QL+ +FANCPPS+EQMQKLYRLLH V KD N E
Sbjct: 121 LRYHVYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKDTNLE 180

Query: 628 LAAKVMIELLGTYTDENASYA 690
           L++KVMIELLGTYT +NA  A
Sbjct: 181 LSSKVMIELLGTYTADNACVA 201


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 133  ALELRRYFKSLGAEISEEKSPKGIED 210
            ++ LRR+++ L  E+S+ K P+G+ED
Sbjct: 4753 SMVLRRHYRHLREELSKLKPPRGLED 4778


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 133  ALELRRYFKSLGAEISEEKSPKGIED 210
            ++ LRR+++ L  E+S+ K P+G+ED
Sbjct: 4753 SMVLRRHYRHLREELSKLKPPRGLED 4778


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,386,547
Number of Sequences: 53049
Number of extensions: 517884
Number of successful extensions: 1521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)