Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d04
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical pr... 75 6e-14
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 30 1.4
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 29 2.4
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 7.3
Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical ... 27 9.6
>U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical
protein K08F11.3 protein.
Length = 390
Score = 74.5 bits (175), Expect = 6e-14
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 7/203 (3%)
Frame = +1
Query: 103 VFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES-DIEA 279
VF I Q ELR+Y L S + P G + ++ +C PS S D++
Sbjct: 9 VFAYIDDVKQLQELRQY---LNKHDSVKLDPNGPSETAQNMIEICSTLNVLPSWSQDVDL 65
Query: 280 ILNSIVSIMVSIPLERGENLILAFSQRLT----KAPG-PKLGMVALQSLWRLYNNLEPNS 444
+LNSI S++V +P E+ E ++ +F + + K G +A++ L LY
Sbjct: 66 VLNSISSLIVVVPGEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFH 125
Query: 445 PLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQN 621
++ ++ ++++ A + E+ +E L+ F E +++ R +H+ +L DQ
Sbjct: 126 TVQEKIFKALVDMCAEARLIGELECNLETLQDRFNTWKTPVEGQREILRAVHRALLVDQR 185
Query: 622 SELAAKVMIELLGTYTDENASYA 690
+ AAKVM LLGTYT+++A+ A
Sbjct: 186 VDQAAKVMTALLGTYTEKDAAAA 208
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 505 REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGT 663
+++ G+ ++E CP +NE+++K+ + D NS A+ +I LG+
Sbjct: 873 KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLGS 923
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 112 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 252
DI L +A +LR Y KSL + + SP+ + ++ V VC A K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 115 ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 288
+SLEDQ LEL + + E+ +EK+ K D K+ + + + E D EA N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313
Query: 289 SIVSIMVSIPLERGENL 339
+VS + S E + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 133 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 225
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 133 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 225
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 133 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 225
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical
protein E01G6.2 protein.
Length = 204
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 55 NKRIQFEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 174
NK+ + K K G ++ MD+ LED+A L ++ G E
Sbjct: 62 NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101
>AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical
protein Y53G8B.2 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 457 HVYYHVIELAARVGFVRE-VFTG 522
H YH + LA+R GFVRE + TG
Sbjct: 201 HPGYHTLTLASRKGFVREALITG 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,610
Number of Sequences: 27780
Number of extensions: 274241
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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