Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d04
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSP 195
           +Q P ++   SL D+A +  + F++L  + S E  P
Sbjct: 625 LQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEP 660


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = -3

Query: 390 SKFRARSLSEPLTKC*DKVFSSF*WYRNHNRDNTVQNGFDIRFTRLFETSITNPNDLMQI 211
           SK R+R  +E       K+ SS      HN +N   N ++  +      +  N   L   
Sbjct: 296 SKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYN 355

Query: 210 ILN 202
           I+N
Sbjct: 356 IIN 358


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 408 RLQSYHSKFRARSLSEPLTKC*DKVFSSF*WYRNH 304
           RL+ +      R   EP+     +V+SS    RNH
Sbjct: 17  RLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH 51


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 474 HRTGCTSWICQGSLHWS 524
           HR     W+ QG+  WS
Sbjct: 165 HRKDYERWVQQGAFGWS 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,027
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)