Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d02
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    91   1e-19
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.93 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.93 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   6.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.7  

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
 Frame = +3

Query: 168 GKSLKLD--TAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARF 341
           GKSLKLD  T +D + +   + +  +++ + L+GNT+G  AA+ +S+ + S  +L+IA F
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 342 SDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCSD- 518
           SD+FTGR+K EIP AL  L   ++    +L  + LSDNAFGP   E L   L      + 
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 519 ---XXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV--FIAGRNRLENDGATALAKVFKEM 683
                          I                  +   I GRNRLEN      AK F+  
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 684 GSLEEIAMPQNGIYHVGITAL 746
             L  + M QNGI   GI  L
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHL 207



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 LAVLDLSDNAFGPIGVEGLAKLLQS 503
           L VLDL DN F  +G   LA  L+S
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKS 242


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
 Frame = -1

Query: 442 SSTAKRAPAAIMPSPKALKAGGISVFILPVNISENLAILSSGCDSKALEIAWAAVTPSVL 263
           SST   +P+A + S  A     +S      + S N  IL++  +S A+  +    + S+ 
Sbjct: 164 SSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVSIT 223

Query: 262 PVNARYWRFGHLLIAST-------ISCASFAVSNFRDFPEKSTPVSGCAGSSSTVFNEFK 104
              + Y      + AST       +S +   VS   D P   + +S  A SSS+   E  
Sbjct: 224 STESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETS 283

Query: 103 S 101
           S
Sbjct: 284 S 284


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 34/140 (24%), Positives = 63/140 (45%)
 Frame = -1

Query: 508 TSLCSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSPKALKAGGISVFILPVNISENLAI 329
           +S  S+ +  ST   P+++S   S++    ++  PS  +L     S+      IS + +I
Sbjct: 597 SSTSSTFSSASTS-SPSSISSSISSSSTILSSPTPSTSSLMISSSSI------ISGSSSI 649

Query: 328 LSSGCDSKALEIAWAAVTPSVLPVNARYWRFGHLLIASTISCASFAVSNFRDFPEKSTPV 149
           LSS   +  +  + +  + SV+P ++        LI S+   AS   S+    P  S+ V
Sbjct: 650 LSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVAS---SSSSPIPSSSSLV 706

Query: 148 SGCAGSSSTVFNEFKSKVAI 89
           S  + S S + +   S  A+
Sbjct: 707 STYSASLSNITHSSLSLTAM 726


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 508 TSLCSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSPKALKAGGISVFILPVNISENLAI 329
           +S  SS + P+T   P++ S  S T+     +   S   L    +S  ILP + S  ++I
Sbjct: 100 SSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159

Query: 328 LSSGCDS 308
            SS   S
Sbjct: 160 SSSSLSS 166


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 157 TPVSGCAGSSSTVFNEFKSKVAILQF 80
           TP+S C G+ S +FN  +   A+L F
Sbjct: 213 TPMSACGGTISDLFNPIQRTGALLVF 238


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 267 YCRSTQDIGGSGIY*SRLQLVVHLSRYPILEIFQ 166
           Y R  +D GG   + SRL + V L+R+ + +  Q
Sbjct: 527 YLRKARDFGGDNEFESRLIIRVQLARHVVRKCLQ 560


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 703 AISSKEPISLKTLASAVAPSFSNRFLPAMKTRSLRFLLESARANNLP 563
           A+S K     +   S+ APS  N+ LPA   ++   L E A + ++P
Sbjct: 483 AMSPKVAPKFQGGRSSTAPSTPNKVLPAASAKAAPKLQEKAASFDIP 529


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -1

Query: 733 PTWYMPFCGIAISSKEPISLKTLASAVAPSFSNRFLPAMKTRS 605
           P W  P  G+ I     +      S   PS+SN   PA    S
Sbjct: 36  PQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAAS 78


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 189 TAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIAR--FSDMFT 356
           ++ D  L+ + ++K PN +Y   T + L V  +Q       S+  LK+     +D+FT
Sbjct: 79  SSDDRALLFNELSKVPNSEYYPATVDALIVITSQGERTESFSNDILKVLSEWLTDLFT 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,877
Number of Sequences: 5004
Number of extensions: 59449
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)