Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d02
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0263 + 26752759-26754393 34 0.14
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243... 31 1.3
06_03_1056 + 27239176-27242361 30 1.7
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 30 1.7
09_04_0524 + 18321110-18323978,18324098-18324576 30 2.2
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 3.0
06_03_1214 + 28469848-28473048 29 3.0
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556... 29 3.9
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 29 3.9
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 29 5.2
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 28 6.9
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 28 6.9
04_04_0261 + 24007790-24009098,24009191-24011118 28 6.9
05_04_0287 + 19837262-19837552,19837672-19837971,19838120-19838212 28 9.1
03_02_0282 + 7074745-7074963,7075050-7075241,7075339-7075932 28 9.1
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 28 9.1
02_02_0034 - 6246183-6246553,6246672-6249699 28 9.1
>05_06_0263 + 26752759-26754393
Length = 544
Score = 33.9 bits (74), Expect = 0.14
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTEIPPAL 389
+ +A+ C L+ L L N GV A A+SK L P+L SD+ T
Sbjct: 319 LAEALGTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLNLENKGT------ 372
Query: 390 SALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLL 497
A+ + + + +L VL+++ N + LA+ L
Sbjct: 373 VAIINTLKQSAPQLEVLEMAGNEINAKASQALAECL 408
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 195 KDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTG 359
K + + + NL+ L + + + AAQA+S+ + S +LKI F + TG
Sbjct: 230 KGVRAFEELLKSQDNLEELYVMNDGISEEAAQALSELIPSTEKLKILHFHNNMTG 284
>06_03_1222 -
28521799-28521900,28521952-28522029,28522292-28524335,
28525188-28525303
Length = 779
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 87 KMATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGN 266
K+ DL S T L G + + L+LD + + A+ C NL+YL+L N
Sbjct: 284 KLTVLDLGS--TGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSAVGNCTNLRYLSLRNN 341
Query: 267 TLGVTAAQAISKALESHPELKIARFS-DMFTGRMKTEI 377
+SK + L+IA FS + FTG + I
Sbjct: 342 KF----VGDLSKVNFTRLNLRIADFSINNFTGTVPESI 375
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 186 DTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRM 365
D A +L DA + PNLQYL L GN L + ++S A + ++ ++ F G++
Sbjct: 245 DNAFRGELPGDAGARTPNLQYLFLGGNLLAGPISASLSNATAL---VALSLANNSFAGQV 301
Query: 366 KTEI 377
EI
Sbjct: 302 PGEI 305
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 177 LKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFT 356
LKLD A+++ + L+ L L+G+ + A+SK P LK +++
Sbjct: 454 LKLDNNPLAEILATDLEALSKLEVLDLSGSASSLPEPSAVSKL----PHLK-----ELYL 504
Query: 357 GRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFG--PIGVEGLAKLLQSDV 509
RMK L D ++ L +LDLS N P G++ L L++ D+
Sbjct: 505 RRMK------LHGFPDSLLGL-KLLRILDLSQNYLTSVPEGIKDLTSLIELDL 550
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALE----SHPELKIARFSDMFTGRMKTEI 377
+ AI+ C +L++L L N L + + + ++L+ S +L A S + T++
Sbjct: 509 VPSAISGCSSLEFLDLHSNALSGSLPETLPRSLQLIDVSDNQLAGALSSSIGLMPELTKL 568
Query: 378 PPALSALGDGM---IAAGARLAVLDLSDNAFGPI 470
+ L G+ I + +L +LDL DNAF +
Sbjct: 569 YLGKNRLAGGIPPEIGSCQKLQLLDLGDNAFSGV 602
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 177 LKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISK 302
L + K A + DAI+ C +L L + GN+L T +ISK
Sbjct: 525 LYMHNNKLAGALPDAISSCQSLMELRMDGNSLNSTIPVSISK 566
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 87 KMATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGN 266
K+ DL S T L G + + L+LD + + A+ C NL+YL+L N
Sbjct: 287 KLTVLDLGS--TGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSALGNCTNLRYLSLRNN 344
Query: 267 TLGVTAAQAISKALESHPELKIARFS-DMFTGRMKTEI 377
+SK + L+IA FS + FTG + I
Sbjct: 345 KF----VGDLSKVNFTWLNLRIADFSINNFTGTVPESI 378
>11_01_0681 -
5568312-5568328,5569057-5569213,5569321-5569482,
5569524-5570546
Length = 452
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 225 NKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMF 353
+ CP LQ+L + G L + A+ IS H + FSD F
Sbjct: 230 SSCPVLQHLEIAGCDLSDSNARKISSLSIKHLNISGCNFSDTF 272
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 171 KSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALE 311
++L L K I DA+++ P+L +L LTGN L + + K ++
Sbjct: 449 QNLDLSNNKLTGPIPDALSQLPSLTFLDLTGNQLSGSIPSGLLKRIQ 495
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 577 ANNLPPVMPRPLLFXXXXXXSEQTSLCSSLARPSTPIGPNALS-LRSSTAKRAPAA 413
A++L P P LLF +S CSS A PS+ GP S +R T PA+
Sbjct: 12 ASHLAPFSPPLLLFFA-----SASSSCSSAASPSSASGPRGCSAVRMETGAVEPAS 62
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 28.3 bits (60), Expect = 6.9
Identities = 30/98 (30%), Positives = 39/98 (39%)
Frame = +3
Query: 171 KSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDM 350
+SL L A D+I C NL YL+L GN + I + L L + +
Sbjct: 240 RSLDLSANHFAGEFPDSIASCSNLTYLSLWGNGFAGKISAGIGE-LAGLETLILGK---- 294
Query: 351 FTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFG 464
R IPP L+ L LD+S NAFG
Sbjct: 295 --NRFDRRIPPELTNC--------TSLQFLDMSTNAFG 322
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 427 RAPAAIMPSPKALKAGGISVFILPVNISENLAILSSGCDSKALEIAW 287
R P+A P P++L+ ++F L + ++ A+L G S++L +W
Sbjct: 6 RRPSAARPRPRSLQRAAAALF-LAIFVALPFAVLYRGPVSRSLHDSW 51
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 378 PPALSALGDGMIAAGARLAVLDLSDNAFG---PIGVEGLAKLLQSDVCSD 518
P ALS G A + LA+L+LS+N F P GV L +L DV S+
Sbjct: 259 PFALSGEIPGFFAELSSLAILNLSNNGFNGSFPQGVFHLERLRVLDVSSN 308
>05_04_0287 + 19837262-19837552,19837672-19837971,19838120-19838212
Length = 227
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 411 IAAGARLAVLDLSDNAFGPIGVEGLAKLLQS 503
+ G L L++SDNA+G GV +LL+S
Sbjct: 12 VLEGDVLRYLNISDNAYGEKGVRAFEELLKS 42
>03_02_0282 + 7074745-7074963,7075050-7075241,7075339-7075932
Length = 334
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -2
Query: 612 PVVSASYWRVRVPTTY---HRLCQ-GRCCSDEAPLGQSRHHF 499
PV+S SY+ P+ Y R+ Q RC AP R HF
Sbjct: 26 PVMSPSYYEASCPSVYDIVRRVVQEARCTDPRAPASLLRLHF 67
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 671 NFGQRGGTVVFQPIPPGYEDP*SPLPTGECACQQLT 564
NF T V P+P GY P SP C+ + T
Sbjct: 280 NFNHEASTRVVNPMPQGYRVPQSPSEPPTCSERNTT 315
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 102 DLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVT 281
+L+ + + P PE G + S+ + + I + KC L+YL + GN L +
Sbjct: 615 NLDLSHNLFTGPILPEIGNLINLGSISIANNRLTGDIPSTLGKCVLLEYLHMEGNLLTGS 674
Query: 282 AAQAISKALESHPELKIAR 338
Q+ L+S EL ++R
Sbjct: 675 IPQSFMN-LKSIKELDLSR 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,377
Number of Sequences: 37544
Number of extensions: 431417
Number of successful extensions: 1367
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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