Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d02
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 185 4e-47
SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13) 38 0.011
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 38 0.011
SB_40259| Best HMM Match : LRR_1 (HMM E-Value=3.5e-05) 34 0.14
SB_34345| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_14398| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05) 32 0.43
SB_53082| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09) 32 0.57
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 31 0.75
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8) 31 1.3
SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8) 30 1.7
SB_23523| Best HMM Match : LRR_1 (HMM E-Value=0.00074) 30 1.7
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 30 2.3
SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3) 29 3.0
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06) 29 4.0
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09) 29 5.3
SB_693| Best HMM Match : efhand (HMM E-Value=2e-09) 29 5.3
SB_38037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 185 bits (450), Expect = 4e-47
Identities = 99/206 (48%), Positives = 126/206 (61%), Gaps = 9/206 (4%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
+ F G+SLKL++A+DA I +AI C ++Q L L GNT+GV AA+AI++AL PE + A
Sbjct: 230 ISFKGESLKLNSAEDAAKICEAIKNCKDMQALCLEGNTIGVEAAKAIAEALSKRPEFERA 289
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 515
+SDMFTGR++ EIPPA+ AL D +I+AG RL LDLSDNAFGP GV+ KLL S C
Sbjct: 290 LWSDMFTGRVRAEIPPAMEALSDAVISAGTRLVELDLSDNAFGPDGVKACVKLLTSPACY 349
Query: 516 DXXXXXXXXXXXXITGG---------XXXXXXXXXXXXXXXVFIAGRNRLENDGATALAK 668
+ GG VFI+GRNRLEN G+ LA+
Sbjct: 350 SLKILRFNNNGLGVGGGKLLSGALLDNHKSSTAAGTPLKLEVFISGRNRLENPGSKCLAE 409
Query: 669 VFKEMGSLEEIAMPQNGIYHVGITAL 746
FK +G+L E+ MPQNGI H GITAL
Sbjct: 410 AFKTIGTLVEVQMPQNGIQHEGITAL 435
>SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)
Length = 489
Score = 37.5 bits (83), Expect = 0.011
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
+D SG L T KDA+++ DAI L+YL L+ N G A + I AL + +
Sbjct: 196 LDLSGNGL---TDKDAKILADAIGNNSTLRYLNLSYNKFGEKAGEVIGAALSYNNGITEL 252
Query: 336 RFS-DMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQ 500
S + R I +L L +LDLS N F G E L + L+
Sbjct: 253 NLSWNQIRRRGAQGIHRSL--------RVNDTLEMLDLSWNGFDDFGTEDLMEALK 300
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 37.5 bits (83), Expect = 0.011
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +3
Query: 102 DLNSLNTVLD--EPAQPETGVDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGN-TL 272
++ ++N++L + Q +D S + D+A +V I + L+ L L+GN +L
Sbjct: 808 EMTAVNSLLSRKDVTQSLLKLDLSANDIGDDSALS---LVTLIQESALLKILNLSGNPSL 864
Query: 273 GVTAAQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSD 452
G T AI L P ++ D+ + +++ +PP L + + AG L +LDLS
Sbjct: 865 GNTTLHAILNTLMDTPLSQLGTL-DLSSCGVRSPLPPELPTVLRDVRNAGCSLNLLDLSG 923
Query: 453 NA 458
NA
Sbjct: 924 NA 925
>SB_40259| Best HMM Match : LRR_1 (HMM E-Value=3.5e-05)
Length = 320
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/105 (21%), Positives = 46/105 (43%)
Frame = +3
Query: 198 DAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTEI 377
D +V+ + PNL L + N +G+ + + L++ K+ + D+ + E
Sbjct: 113 DMSAVVNVLKHAPNLNTLLMPYNNIGLFGCKEVLTLLQNFGN-KLTKL-DLRFNSIGDE- 169
Query: 378 PPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVC 512
+G + +L LD+SDN G G + + + L+ + C
Sbjct: 170 --GAKYIGKALAHENCKLTKLDISDNNIGDEGAKYIGEALRHENC 212
>SB_34345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 33.1 bits (72), Expect = 0.25
Identities = 26/101 (25%), Positives = 48/101 (47%)
Frame = +3
Query: 195 KDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTE 374
K+A +++A+ +++ L L+ N LG+ A I L + L + D+ ++
Sbjct: 170 KNAVALLEALRYHTSIKTLNLSYNDLGLEGATLIGLVLRDNKRL---HYLDISWNNIRDT 226
Query: 375 IPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLL 497
+ +G++ L +LDLS N FG G E L++ L
Sbjct: 227 -----DKIAEGLVT-NTCLEILDLSRNGFGDRGAENLSQAL 261
>SB_14398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/101 (22%), Positives = 46/101 (45%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTEIPPAL 389
+V+ + PNL L +T N +G+ + + L++ K+ + D+ + E
Sbjct: 4 VVNVLKHAPNLNTLLITHNDIGLFGCKEVLTLLQNFGN-KLTKL-DLPFNSIGDE---GA 58
Query: 390 SALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVC 512
+G+ + +L LD+SDN G G + + + L + C
Sbjct: 59 KYIGEALGHENCKLTKLDISDNDIGDEGAKYIGEALGHENC 99
>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
Length = 530
Score = 32.3 bits (70), Expect = 0.43
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -1
Query: 307 KALEIAWAAVTPSVLPVNARYWRFGHLLIASTISCA---SFAVSNFR-DFPEKSTPVSGC 140
K+L+IA A +T P+N + HLLI A FAV DF + T G
Sbjct: 293 KSLKIASALITKRKDPINGHLFLIKHLLILREQIAAFDVDFAVKEVSLDFSKMRTAAYGL 352
Query: 139 AGSSSTVFNEFKSKVAILQFM 77
S +F+ S AIL F+
Sbjct: 353 WSKSGRIFS-LNSSNAILDFL 372
>SB_53082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 630 NRLENDGATALAKVFKEMGSLEEIAMPQNGIYHVGITAL 746
NR+ GA ALAK KE SL+ + + NG VG AL
Sbjct: 224 NRILGKGAIALAKGVKESWSLKVLKLAWNGFGDVGAQAL 262
>SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)
Length = 539
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 201 AQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPEL 326
A+LIVD + NLQ L L N +G +A+S+ +E + L
Sbjct: 196 ARLIVDMLRDNKNLQRLGLAKNNVGAKTMKALSEVMEVNKTL 237
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 632 IPPGYEDP*SPLPTGECA 579
+P GY DP +P P GECA
Sbjct: 362 VPTGYSDPATPTPRGECA 379
>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 642 NDGATALAKVFKEMGSLEEIAMPQNGIYHVGITAL 746
++GA LA V G+L+ +A+P GI+ G+ A+
Sbjct: 811 DEGAIMLASVLANNGTLKYLALPSCGIHTTGLAAI 845
>SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8)
Length = 205
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 188 YRERCTTNCRRDQ*MPEPPISCVDRQYTRCD 280
Y E+CT +++ PP + +R+Y RCD
Sbjct: 71 YHEKCTPKSLKERVKSAPPRTFSEREYARCD 101
>SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8)
Length = 190
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/98 (23%), Positives = 47/98 (47%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTEIPPAL 389
I +A+ ++ L + GN + A +A+ + L + + + +F G + AL
Sbjct: 88 IAEALKVNTTVRKLGIKGNNMTPEAGRALGEMLRHNTTITLL---SLFHGNIGNS--GAL 142
Query: 390 SALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQS 503
S + G++ L + + ++ GP GV LAK++Q+
Sbjct: 143 S-IASGLLQ-NTTLEKIQIVNSCIGPTGVSALAKVIQN 178
>SB_23523| Best HMM Match : LRR_1 (HMM E-Value=0.00074)
Length = 615
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 360 RMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQ 500
R+K ++ P L ALG L LD+S N G G LAK LQ
Sbjct: 309 RLKQDVTPLLDALG-----TNETLVELDISGNQMGDEGARILAKALQ 350
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 282 LSHLVYCRSTQDIGGSGIY*SRLQLVVHLSRYPILEI 172
LS +YC S+Q IGGSG S +L +S Y + +I
Sbjct: 87 LSSPLYCHSSQGIGGSGRA-SATKLAAFMSDYELFQI 122
>SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3)
Length = 309
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/105 (20%), Positives = 45/105 (42%)
Frame = +3
Query: 198 DAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSDMFTGRMKTEI 377
D +V+ + PNL L + N +G+ + + L++ + + D+ + E
Sbjct: 189 DMSAVVNVLKHAPNLNTLLMPNNNIGLIGCKEVLTLLQNFGNT-LTKL-DLTLNSIGDE- 245
Query: 378 PPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVC 512
+G + +L LD++DN G G + + + L+ + C
Sbjct: 246 --GAKYIGKALRHKNCKLNHLDINDNNIGVDGAKYIDEALRHENC 288
>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
Length = 598
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 599 LPTGECACQQLTTGYAKAVVVQTKLL 522
+P+G+CAC +LT+G ++ Q K L
Sbjct: 292 VPSGQCACPELTSGRDYVIMGQIKRL 317
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 514 EQTSLCSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSPKALKA 383
E++S ++ RPST P+A S K+APAA S A++A
Sbjct: 726 EKSSRPATRGRPSTGRKPSAKSCPEQDKKQAPAASPKSKSAVEA 769
>SB_2973| Best HMM Match : efhand (HMM E-Value=2e-09)
Length = 508
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 630 NRLENDGATALAKVFKEMGSLEEIAMPQNGIYHVGITAL 746
NR+ ++GA A A+ K SLE + +N I G +L
Sbjct: 316 NRVGDEGAIAFARTLKNNSSLESLYAAKNNITENGACSL 354
>SB_693| Best HMM Match : efhand (HMM E-Value=2e-09)
Length = 500
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 630 NRLENDGATALAKVFKEMGSLEEIAMPQNGIYHVGITAL 746
NR+ ++GA A A+ K SLE + +N I G +L
Sbjct: 308 NRVGDEGAIAFARTLKNNSSLESLYAAKNNITENGACSL 346
>SB_38037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.3 bits (60), Expect = 7.0
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +3
Query: 162 FSGKSLKLDTAKDAQLIVDAIN--KCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
F KSL + A+ I +A++ C L +L ++ + +G A+ I + L H K+
Sbjct: 7 FMWKSLMNIGNEGAKYIGEALSHENC-KLTHLNMSSDNIGDEGAKYICEELR-HENCKLT 64
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVC 512
+ D+ + E +G+ + +L LD+SDN G G + + + L + C
Sbjct: 65 KL-DLPFNSIGDE---GAKYIGEALGHENCKLTKLDISDNDIGDEGAKYIGEALGHENC 119
>SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 270 LGVTAAQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLS 449
LG ++AI+ AL S+ + SD + G P S + + M+ + LD+S
Sbjct: 125 LGAMGSKAIAIALVSNTSVVKLNLSDNWMG------PEGASYVAE-MLRENCYITDLDMS 177
Query: 450 DNAFGPIGVEGLAKLL 497
+N G G E +A +L
Sbjct: 178 ENKLGDHGSESIADVL 193
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 161 FFWKIS-KIGYRERCTTNCRRDQ 226
F WK+S K GY RCT N +++
Sbjct: 331 FVWKLSRKCGYTNRCTLNTTQEE 353
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 188 YRERCTTNCRRDQ*MPEPPISCVD 259
YR+RCT N + D + +P SCVD
Sbjct: 484 YRDRCTDNHQWDFVINDPKKSCVD 507
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,529,970
Number of Sequences: 59808
Number of extensions: 465113
Number of successful extensions: 1186
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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