Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12d02
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 160 1e-39
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 160 1e-39
Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical pr... 34 0.093
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 30 1.5
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical pr... 28 6.1
AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopam... 28 6.1
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 28 6.1
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 28 8.1
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 28 8.1
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with ran
(nuclear import/export) function protein 2, isoform b
protein.
Length = 926
Score = 160 bits (388), Expect = 1e-39
Identities = 94/207 (45%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A I+KALESHPEL+
Sbjct: 413 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 472
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 515
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 473 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 532
Query: 516 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 665
I G V FIAGRNRLEN GA ALA
Sbjct: 533 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 592
Query: 666 KVFKEMGSLEEIAMPQNGIYHVGITAL 746
FK + ++E + QNGI+ GI AL
Sbjct: 593 ATFKALETVEWFDVRQNGIHEEGIRAL 619
Score = 135 bits (326), Expect = 4e-32
Identities = 82/205 (40%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
+ F GK LKLDT ++ ++D I K NL+ L GNTL V A + I+++L++ ELK
Sbjct: 7 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 66
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 515
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 67 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 126
Query: 516 DXXXXXXXXXXXXITG--------GXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKV 671
+ G F+ GRNRLE + AL+
Sbjct: 127 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 186
Query: 672 FKEMGSLEEIAMPQNGIYHVGITAL 746
F ++G+LEEI +PQNGI GI AL
Sbjct: 187 FIKLGTLEEIRLPQNGIRDDGIIAL 211
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSD 347
+V A+ NL+YL L NT+ A+A++K LES P+L++ SD
Sbjct: 619 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 664
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with ran
(nuclear import/export) function protein 2, isoform a
protein.
Length = 960
Score = 160 bits (388), Expect = 1e-39
Identities = 94/207 (45%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A I+KALESHPEL+
Sbjct: 450 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 509
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 515
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 510 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 569
Query: 516 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 665
I G V FIAGRNRLEN GA ALA
Sbjct: 570 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 629
Query: 666 KVFKEMGSLEEIAMPQNGIYHVGITAL 746
FK + ++E + QNGI+ GI AL
Sbjct: 630 ATFKALETVEWFDVRQNGIHEEGIRAL 656
Score = 135 bits (326), Expect = 4e-32
Identities = 82/205 (40%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Frame = +3
Query: 156 VDFSGKSLKLDTAKDAQLIVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIA 335
+ F GK LKLDT ++ ++D I K NL+ L GNTL V A + I+++L++ ELK
Sbjct: 44 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 103
Query: 336 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 515
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 104 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 163
Query: 516 DXXXXXXXXXXXXITG--------GXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKV 671
+ G F+ GRNRLE + AL+
Sbjct: 164 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 223
Query: 672 FKEMGSLEEIAMPQNGIYHVGITAL 746
F ++G+LEEI +PQNGI GI AL
Sbjct: 224 FIKLGTLEEIRLPQNGIRDDGIIAL 248
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 210 IVDAINKCPNLQYLALTGNTLGVTAAQAISKALESHPELKIARFSD 347
+V A+ NL+YL L NT+ A+A++K LES P+L++ SD
Sbjct: 656 LVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSD 701
>Z81527-6|CAB04275.1| 739|Caenorhabditis elegans Hypothetical
protein F35E12.7a protein.
Length = 739
Score = 34.3 bits (75), Expect = 0.093
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = -1
Query: 694 SKEPISLKTLASA-VAPSFSNRFLPAMKTRSLRFLLESARANNLPPVMPRPLLFXXXXXX 518
S PI+ KT S V+ S + P T + + L A+A++ P P+
Sbjct: 529 SSSPITSKTTTSINVSSSTTKSTRPMQSTTTYQKL---AQASSTASTTPIPIT------- 578
Query: 517 SEQTSLCSSLARPST--PIGPNALSLRSSTAKRAPAAIMPSPKALKA 383
Q +S+A PST PI P+ ++ RSST K +P I S A A
Sbjct: 579 -TQNISTASIATPSTKTPITPSLITTRSSTTKLSPIVITKSSLAYTA 624
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Frame = +3
Query: 111 SLNTVLDEPAQPETGVDFSGKSLKL--DTAKDAQLIVDAINKCPNLQYLALTGNTLGVTA 284
+L VL AQP + F +L + ++ V+ +N P Y+ G T G
Sbjct: 152 NLQQVLKSQAQPHL-LPFLQNTLPALRNAVRNGTASVEGVNPPPG--YVFNNGRTPGPPQ 208
Query: 285 AQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFG 464
+ + P L++ + + +IPP + G M++ GAR + +
Sbjct: 209 PPPPQQQSQQQPPLEMRQIPN------PNQIPPQMVQGGPHMVSVGARPMIRPMGPGGPS 262
Query: 465 PIGVEG 482
P+G++G
Sbjct: 263 PMGLQG 268
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNISENLAILSSGCDSKALEIA 290
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical
protein K09G1.4a protein.
Length = 705
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNISENLAILSSGCDSKALEIA 290
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopamine
receptor shortvariant protein.
Length = 705
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNISENLAILSSGCDSKALEIA 290
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 SLRSSTAKRAPAAIMPSPKALKAGGISVFILP-VNISENLAILSSGCDSKALEIA 290
SL ST + P+ I+ S L G+S+ ++P + + NL ++ S +AL+ A
Sbjct: 17 SLDLSTITQTPSTIVGSGIPLNYAGLSLIVIPLITLLGNLLVIISVLRYRALQSA 71
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -1
Query: 271 SVLPVNARYW----RFGHLLIASTISCASFAVSNF 179
SVLP+ +Y+ RFGHL + T + ++SNF
Sbjct: 133 SVLPITFQYYKLSIRFGHLFVYGTYISSVCSLSNF 167
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 499 CSSLARPSTPIGPNALSLRSSTAKRAPAAIMPSP 398
C S A+ PN +S SS +K AP A P P
Sbjct: 24 CKSKAKKPKAAAPNPISSISSNSKVAPPASPPPP 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,051
Number of Sequences: 27780
Number of extensions: 336971
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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