Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12d02
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   7.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.0  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   7.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   7.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 331  ILSSGCDSKALEIAWAAVTPSVLPVNARYWRFGHLLI 221
            I SSG DS +   +W A T S      R  ++G L++
Sbjct: 1066 ITSSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVM 1102


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 747 IEPLYRHGICR 715
           + PLY HG+C+
Sbjct: 274 VHPLYGHGVCK 284


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 282  AAQAISKALESHPELKIARFSDMFTGRMKTEIPPALSALG 401
            A++ ++ A       KIA F D FT   K ++     A+G
Sbjct: 1263 ASKIVALAPSVRVPAKIASFDDKFTATYKEDVKLPCLAVG 1302


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 518 PRGASSEQQRP 550
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 518 PRGASSEQQRP 550
           PRG+S+E+Q+P
Sbjct: 8   PRGSSAEEQQP 18


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 235 GHLLIASTISCASFAVSNFRDFPEKSTPVSGCAGSSSTVFNEFKSKV 95
           GH  +    + AS    NF  F        G  G  +++ N+ K+++
Sbjct: 33  GHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL 79


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 235 GHLLIASTISCASFAVSNFRDFPEKSTPVSGCAGSSSTVFNEFKSKV 95
           GH  +    + AS    NF  F        G  G  +++ N+ K+++
Sbjct: 33  GHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL 79


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 235 GHLLIASTISCASFAVSNFRDFPEKSTPVSGCAGSSSTVFNEFKSKV 95
           GH  +    + AS    NF  F        G  G  +++ N+ K+++
Sbjct: 33  GHQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,305
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)