Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c23
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.47 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.47 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.62 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.62 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   5.8  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   7.7  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 486 IDSLAVIPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASSDIA 662
           ++S  V  STS   F++   S +  +  T+  S    T A S+++ P+T  P+++S ++
Sbjct: 494 VNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVS 552


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 492 SLAVIPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASS 653
           S + +PSTST   T+T      +  T   P++ P +T+ ++  PP  +  S  +
Sbjct: 328 SSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 504 IPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASS 653
           +P+TST   T+T      +  T   P++ P +T+ ++  PP  +  S  +
Sbjct: 278 LPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 507  PSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTA---GPSAS 650
            P+T T  F+ T  +TI+   TT  P +NP   + S   PPTT+   GP  S
Sbjct: 864  PTTFTSTFSFT--TTIIGGTTTIIP-VNPGNPSSSVSAPPTTSFTPGPGGS 911


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 486 IDSLAVIPSTSTGGFTTT-HQSTIVDKQTTAGPSINPQTTAGSAINPPTT 632
           I S+   PSTS    TTT   +T ++  TT  P+ +  TT  +A  PPTT
Sbjct: 66  ITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA--PPTT 113


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 63   EYNIHYFIYLFDLIHI*FNRVVFLIFKCSE*KLSKMHENNPTDNTTD 203
            E+    ++YL + I+  F+R  FL+ K SE  L+++ + + + +T D
Sbjct: 1112 EFKSQVYLYLREWINALFDRFTFLLGKESEHLLNELDDTHSSLSTVD 1158


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 507  PSTSTGGFTTTHQSTIVDKQTTAGPSIN-PQTTAGSAINPPTTAGPSASSDIAFAKPN 677
            P+T+      T  +T + + TT   S   P T   +A +P   + PSA      +KP+
Sbjct: 1035 PNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPS 1092


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 E*KLSKMHENNPTDNTTDLR 209
           E K SK+  NNP+DN T ++
Sbjct: 211 ERKKSKLSSNNPSDNNTTMK 230


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 402 VTSKQRKSAAEYQR-EYQARKKAKR 473
           +++  +KSAA+ QR E +ARKK KR
Sbjct: 1   MSATAKKSAAQLQREEEEARKKLKR 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,631
Number of Sequences: 5004
Number of extensions: 48145
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)