Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12c23
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 39 0.004
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 34 0.091
12_02_0004 - 12165074-12165334,12165405-12165489,12165584-12165957 30 2.0
02_05_0450 - 29117826-29118212,29118307-29118733,29119158-291192... 29 3.4
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 4.5
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 28 6.0
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 6.0
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286... 28 7.9
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 28 7.9
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 28 7.9
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +3
Query: 399 SVTSKQRKSAAEYQREYQARKKAKRDNILIDSLAVIPST-STGGFTTTHQ----STIVDK 563
S K+R+ +YQRE++ARKKAK +N +D + ST + G F+T ++ T+ DK
Sbjct: 165 SSIDKRREQKTKYQREWRARKKAKLNN--VDGWSATSSTPAIGAFSTINEGSLYGTVADK 222
Query: 564 Q 566
+
Sbjct: 223 E 223
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 34.3 bits (75), Expect = 0.091
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 411 KQRKSAAEYQREYQARKKAKRDNILIDSLAVIPSTSTGGFTTTHQSTIV 557
KQR+ QREY+ARKKA+ +N ++ + F TT+ STI+
Sbjct: 179 KQREDRNRKQREYRARKKAESNNAILANFDATTPIIGSSFGTTY-STIL 226
>12_02_0004 - 12165074-12165334,12165405-12165489,12165584-12165957
Length = 239
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 390 VAGSVTSKQRKSAAEYQREYQARKKAKRDNILIDSLAVIPSTST 521
V+ TS +R+ Y RE++ARKKAK I S ++P+ +T
Sbjct: 16 VSEITTSAKREQNNSYLREWRARKKAKSSGCSIVS-PIMPTQAT 58
>02_05_0450 -
29117826-29118212,29118307-29118733,29119158-29119296,
29119426-29119530,29119624-29119705
Length = 379
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 498 AVIPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASSDIAFAK 671
AVI S GGFTT +T V + +N G PP A +A + A +
Sbjct: 160 AVIVGNSLGGFTTLFAATEVPELVRGVVLLNSAGQFGDPNRPPEAAEAAAGEESAVTR 217
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 399 SVTSKQRKSAAEYQREYQARKKAK 470
S ++R+ +YQRE++ARKKAK
Sbjct: 11 SSDKRKREERNKYQREWRARKKAK 34
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 507 PSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAG-PSASS 653
P ++T +++ S+ + T S + T+G+AI PTT+ PS +S
Sbjct: 39 PPSTTSSSSSSSSSSSTNSPTATAASSSSTNTSGAAIVHPTTSSHPSVAS 88
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 387 NVAGSVTSKQRKSAAEYQREYQARKKAKRDNILIDSLAVIPSTSTGGFTTTHQSTIVDKQ 566
N+ S S E E ++AK L S+ ++P ++ GF+T + S+++
Sbjct: 251 NLKNSARSPSSARLVEIVDEDSEAEQAKNSKSL--SMQIVPHKNSQGFSTPNSSSVLQVS 308
Query: 567 TTAG 578
T G
Sbjct: 309 TVTG 312
>12_01_0999 -
10128057-10128143,10128346-10128516,10128602-10128677,
10128787-10128917,10129007-10129111,10129215-10129391,
10129475-10129623,10129715-10129826,10131819-10132070,
10132323-10132444,10132537-10133371,10133386-10133489,
10133582-10133647,10133766-10133888,10133975-10134151,
10134217-10134387,10134478-10134957,10135357-10135369
Length = 1116
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = +3
Query: 387 NVAGSVTSKQRKSAAEY-----QREYQARKKAKRD 476
N+ GSVTS A QREY+ARKKAK D
Sbjct: 117 NLDGSVTSLTPVQPANEERNRKQREYRARKKAKSD 151
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +3
Query: 423 SAAEYQREYQARKKAKRDNILIDSLAVIPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTT 602
S ++ +Y K ++L + +AV S +T HQ ++ P P
Sbjct: 734 SGPRHRPDYNLSYKVDLKSVLPEQVAVGFSAATSTSVELHQLRSWYFSSSLEPKAAPPPV 793
Query: 603 AGSAINPPTTAGPSASSDIAFA 668
A + +PP T+G + +A A
Sbjct: 794 APPSPSPPPTSGSGSGGVVAGA 815
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 679 LLGFAKAISLLAEGPAVVGGLIADPAVVCGL-IEGPAVVCLSTI 551
LL A A LLA GPA++G + L ++G A LST+
Sbjct: 80 LLASASASGLLARGPALLGTCNFQTQLASALAVDGDAASALSTL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,116
Number of Sequences: 37544
Number of extensions: 283207
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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