Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c23
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   1.7  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           24   3.9  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       23   6.7  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 504 IPSTSTGGFTTTHQSTIVDKQT-TAGPSI--NPQTTAGSAINPPTTAGPSASSD 656
           +P   TG   TT+ S        TA PS   N  +TAG   N P TAG     D
Sbjct: 347 LPLNPTGAAGTTNSSANSGTGGGTAAPSSGSNANSTAGLNNNEPDTAGGGTVGD 400


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 501 VIPSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASSDIAFAKP 674
           V P+T+T    TT  +T+   QTT       QTT  +  + P T   S  +    + P
Sbjct: 43  VAPTTTTTVAPTT-TTTVAPGQTTTTTVAPGQTTTTTVASGPVTTTGSTDTTTPSSAP 99


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 531 TTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASS 653
           TTT   ++    +T  P     T  G+  NP TT  P++ +
Sbjct: 406 TTTMPPSVAPTTSTVAPGTTTTTPTGA--NPGTTQPPTSDA 444


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,175
Number of Sequences: 2352
Number of extensions: 12664
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)