Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c23
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 665 KSNITTRRRPSSRWWINSRPSSRLWINR 582
           + NI   +RP   WW   +P S  WI R
Sbjct: 66  QENIVIDKRP---WWERYQPISYKWITR 90


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +3

Query: 507 PSTSTGGFTTTHQSTIVDKQTTAGPSINPQTTAGSAINPPTTAGPSASSDIAFAKPNK 680
           P+T+    TTT  +T     TT  P+    T   SA  PP         +++ A+  K
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPN---TTQNASATTPPPQVDEVDDKELSGAEEEK 708


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 214 HNLKSVVLSVGLFSCIFDNFYSLHLKIKNTTLLNYMCIKSN 92
           H    V  S G  SC+   +  L LKI  +T+L    ++S+
Sbjct: 474 HYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSD 514


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 35  IYLLFNFNLRV*YSLFHLLI 94
           I ++FN   R+ Y LFH  I
Sbjct: 203 IQIVFNLRRRLGYHLFHTYI 222


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 567 TTAGPSINPQTTAGSAIN 620
           TTA P+  P TT  + I+
Sbjct: 382 TTASPTTEPSTTTSTTIS 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,533
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)