Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c22
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0680 - 27217563-27220088                                         33   0.17 
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    30   2.0  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   2.7  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    29   3.6  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    28   8.3  
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    28   8.3  

>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 LRTLRDIYTMPYFYPGHLQYWHT*RSCPPAQC 304
           + ++ D Y MPY Y  HLQY    +  PPA C
Sbjct: 578 VNSISDEYPMPYRYIAHLQYPRNYQPAPPAGC 609


>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 521 SWDELLEDGTRRFEMRC 471
           SWD+ L+ G RRFE +C
Sbjct: 206 SWDDALQSGARRFEHKC 222


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +1

Query: 217 STRYLYDAVFLSRPSTILAHIEVLSPGTMC---VTRVTASSPQSHSPVSKTGLTL 372
           ST   Y     SR + I  H  +L  G       T +   +P  H+P+S   LTL
Sbjct: 22  STEPFYSVASCSRTTRIACHASLLPHGAALRALATAMATPTPMPHTPISSQTLTL 76


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 212 VNLYTSILNYSSNKLLCPSNNFDSNTDAAFAFEVPGSYPLSGNGLN--EPTYRFYLD 48
           V+L +S++  +     C   N D+N       E+  +Y + GN  N   PT R +LD
Sbjct: 28  VDLKSSLITMAQASPFCGKPNEDANAHLQQFLEICSTYTIKGNFYNGLTPTSRDHLD 84


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +1

Query: 367 TLVCTLRTLVHTFGRHSRGLSGLTNMRLL--LLSRALQRISKRLVPSSNNSSQLR-RNVL 537
           T +C L+ L+H FG   +   G+ NMR L  L    +   S   VP     + LR   + 
Sbjct: 643 TELCLLKKLLHLFGNSLKLPDGIGNMRNLQVLTGINISNSSASTVPELGELTSLRDLKIS 702

Query: 538 VATFTSRPSNRSNRMFLLLC 597
           ++   S+   +   +   LC
Sbjct: 703 LSDKLSKCKTKEEMLLASLC 722


>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 143 SNTDAAFAFEVPGSY 99
           SNTD A AFEVPG +
Sbjct: 305 SNTDVALAFEVPGGW 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,727,808
Number of Sequences: 37544
Number of extensions: 424601
Number of successful extensions: 1139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)