Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c22
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical ...    31   0.80 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   1.1  
U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna...    29   3.2  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   3.2  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   7.4  
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical
           protein C50F7.9 protein.
          Length = 298

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 665 YYAGTDNMTQIAGRQHFDRIMPGQSNRNILFDRLLGREVNVATNTFRRSWDELLED 498
           +Y G+ ++  +  +  FD         NIL+DR  GR   +A   FR +W +LL D
Sbjct: 201 FYDGSQHIKALFTKSAFDEANLVSCQFNILYDRPKGR---LARREFRATWKKLLYD 253


>AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical
           protein Y46H3D.8 protein.
          Length = 247

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
 Frame = -1

Query: 604 CPDRVIGTSCLTDY*AER*TWPLTRFAAAGTSCWKTALDVSKCAATPEITTIISCLLTRL 425
           C + +   SC   Y A     P T + AAG    +     +   ATP  T  +S ++T  
Sbjct: 44  CSNVISDASCQVLYAA-----PDTLYPAAGNDAERAYACYTTATATPAAT--VSDMVTAA 96

Query: 424 IPSSVSRTCALVFAT----CTPALDPSLKRANVTAATKRSRVLHTL 299
           I S+  +TC    AT    C+    P L  +++TAA   S V  T+
Sbjct: 97  I-STCPKTCGFCCATSAYSCSNVAYPRLTCSSITAAQCASSVWRTI 141


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 523 AAGTSCWKTALDVSKCAATPEITTIISCLL-TRLIPSSVSR-TCALVFATCTPALDPSLK 350
           A   +C  T    S    TP  TT+ S +  T  +P+S S  T A+  +T TP+   +++
Sbjct: 262 AGDNTCDYTIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIE 321

Query: 349 RANVTAATKRS 317
             + T  +  S
Sbjct: 322 STSTTFTSTAS 332


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 523 AAGTSCWKTALDVSKCAATPEITTIISCLL-TRLIPSSVSR-TCALVFATCTPALDPSLK 350
           A   +C  T    S    TP  TT+ S +  T  +P+S S  T A+  +T TP+   +++
Sbjct: 262 AGDNTCDYTIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIE 321

Query: 349 RANVTAATKRS 317
             + T  +  S
Sbjct: 322 STSTTFTSTAS 332


>U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK430.8 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 194 ILNYSSNKLLCPSNNFDSNTDAAFAFEVPGSYPLSGNGLNEPTYR 60
           +L  S +K++ P   +D+N DA  A E   S    G+G+ E  Y+
Sbjct: 457 LLGVSFDKVIGPYKGYDTNVDATIANEFTTSAFRFGHGMIEEFYK 501


>AC024791-22|AAF60676.1|  339|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform a protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 493 LDVSKCAATPEITTIISCLLTRLIPSSVSRTCALVFA 383
           L V KC   P+  T +       IP+SVS  CA + A
Sbjct: 278 LRVGKCVTPPDALTYLQPASVSAIPASVSVACAAITA 314


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 493 LDVSKCAATPEITTIISCLLTRLIPSSVSRTCALVFA 383
           L V KC   P+  T +       IP+SVS  CA + A
Sbjct: 278 LRVGKCVTPPDALTYLQPASVSAIPASVSVACAAITA 314


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = +3

Query: 243 IFIQAIYNTGTHRGPVPRHNVCNTRDRFVAAVTFARFKDGSNAGVHVANTSAHVRETLEG 422
           +F+  +Y+ G      P  N  ++   F   +   R + G   G+ +   + H+R  L+ 
Sbjct: 683 VFLNIVYHDGIRYSIYPNKNTDDSNIMFFEGI---RVRFGKIVGILINKDNTHLRFILK- 738

Query: 423 IKRVNKHEIIVVISGVAAHFETSSAVFQQLVPAAAK-RVSGHVHLS 557
            K  N +E ++ IS   A  E      Q    + AK    G V L+
Sbjct: 739 -KYCNTNEHLLDISNKMAQEEVPQMHIQNWFDSVAKSNFGGRVMLT 783


>Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.22a protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 362 PVFETGECDCGDEAVTRVTHIVPGDRTSMCASIV 261
           P F+ G   CGDE V      V G+R S  A ++
Sbjct: 53  PAFKDGRIRCGDEIVAINGITVKGERKSAVAQLI 86


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -3

Query: 299 VPGDRTSMCASIVDGLDKNTASYRYRVECVNLYTSILNYSSNKLLCPSNNFDSNTDA 129
           +P +  S C++  +   +NT   +++    N + S+ N+S+    CPS+N  + T+A
Sbjct: 763 LPTEIASNCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -3

Query: 299 VPGDRTSMCASIVDGLDKNTASYRYRVECVNLYTSILNYSSNKLLCPSNNFDSNTDA 129
           +P +  S C++  +   +NT   +++    N + S+ N+S+    CPS+N  + T+A
Sbjct: 763 LPTEIASNCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 205 RFTHSTRYLYDAVFLSRPSTILAHIEVLSPGTMCVTRVTASSPQSHSPVSKTGLTLVCTL 384
           R T S+     A   + PST+    +  +  T+  TR+T  +  S  P + T  T     
Sbjct: 164 RTTRSSTARTVATTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTTTVTTTTSAA 223

Query: 385 RTLVHT 402
           RT+  T
Sbjct: 224 RTIATT 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,364,638
Number of Sequences: 27780
Number of extensions: 356370
Number of successful extensions: 940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)