Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12c21
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 31 0.63
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 29 3.3
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 29 3.3
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical pr... 28 7.7
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 28 7.7
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 28 7.7
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 28 7.7
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 140 KRKIGDSSSDDNQPKRERVESGEDQQ 217
K K GDSSSDD+ P+R+R E D +
Sbjct: 13 KFKRGDSSSDDSGPERDRDEDDSDNE 38
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 629 QFFSIQYGDIHKHNNIFGNILQDTCKAIF 715
Q F+ Y +H+ ++FG+I++DT AIF
Sbjct: 653 QKFAGGYVYVHRDRDVFGSIIKDTLLAIF 681
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 629 QFFSIQYGDIHKHNNIFGNILQDTCKAIF 715
Q F+ Y +H+ ++FG+I++DT AIF
Sbjct: 679 QKFAGGYVYVHRDRDVFGSIIKDTLLAIF 707
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = -1
Query: 701 KCLAKCCQIYCCV--CECLRIEC*KTGQSC 618
KC CC+ CC C C R C G C
Sbjct: 80 KCCCTCCRTCCCTRCCTCCRPCCCGCGCGC 109
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = -1
Query: 701 KCLAKCCQIYCCV--CECLRIEC*KTGQSC 618
KC CC+ CC C C R C G C
Sbjct: 82 KCCCTCCRTCCCTRCCTCCRPCCCGCGCGC 111
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = -1
Query: 701 KCLAKCCQIYCCV--CECLRIEC*KTGQSC 618
KC CC+ CC C C R C G C
Sbjct: 85 KCCCTCCRTCCCTRCCTCCRPCCCGCGCGC 114
>Z95619-3|CAB54269.1| 490|Caenorhabditis elegans Hypothetical
protein H21P03.3b protein.
Length = 490
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 491 PDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFG 628
PD+N+ V N T IGP+++ P D G ++A+++ G
Sbjct: 25 PDQNVDVKVQENNVVTTKIGPKLETIPAAKMQDDNGDEEKAENSEG 70
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 489 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 361
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 489 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 361
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 489 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 361
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,257,957
Number of Sequences: 27780
Number of extensions: 395262
Number of successful extensions: 1349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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