Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12c21
(719 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 0.18
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 24 1.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.8
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 5.1
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 5.1
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 5.1
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 5.1
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 5.1
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 6.7
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 8.9
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 8.9
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.9
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 8.9
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 27.1 bits (57), Expect = 0.18
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 193 SFPLWLVVVAARIANLAFSCHATDVRCLLWFKSN*SVSQNIRYIIN 56
+FP+W V + AR+ L+ + RC + + VS N +++
Sbjct: 904 TFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVSDNAHKVVD 949
Score = 21.8 bits (44), Expect = 6.7
Identities = 7/16 (43%), Positives = 7/16 (43%)
Frame = -1
Query: 704 CKCLAKCCQIYCCVCE 657
C L CC C CE
Sbjct: 743 CFALCHCCDFDACDCE 758
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 24.2 bits (50), Expect = 1.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 605 LWFQSRKTKIRRACPAL 555
+WFQ+R+TK ++ P L
Sbjct: 54 IWFQNRRTKWKKQNPGL 70
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 528 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 427
P+ GS + SGS NLSS S ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK + S + ++ KRER S E + + +NN
Sbjct: 57 RKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK + S + ++ KRER S E + + +NN
Sbjct: 57 RKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 553 WTDGVRSLAVGRLQHHD 503
WTDG+ +A+ + HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 6.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIVSSLSNN 88
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 543 VYVVLPLAGSNTTIFLSGSGYNLSS 469
+Y+VLP+ IF++G N+S+
Sbjct: 50 LYIVLPITVIYAVIFVTGLVGNVST 74
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ ++ER +S E + + +NN
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ ++ER +S E + + +NN
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 143 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 238
RK ++S + ++ ++ER +S E + + +NN
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 8.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 453 IVCTNGKTSCIPSPIKISWC 512
+V ++G SC+PS ++ C
Sbjct: 150 LVFSSGSVSCVPSVKHVAKC 169
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 8.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +1
Query: 502 YRGVGAGQRQDYVHHRSKSA 561
Y G+G G D ++ R+K +
Sbjct: 1440 YNGIGTGDPSDMLNTRTKGS 1459
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 8.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 480 NLSSHSCKLFKLASRQNSFFKNLPSKQLQ 394
N S +L K A N F KNL Q++
Sbjct: 84 NKRDRSRELIKAAILANDFMKNLELTQIR 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,164
Number of Sequences: 438
Number of extensions: 5219
Number of successful extensions: 32
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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