Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12c19
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)                   30   0.68 
SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)                    30   0.89 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   1.2  
SB_25867| Best HMM Match : rve (HMM E-Value=4.4e-13)                   29   1.2  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_57616| Best HMM Match : Oxidored_q1 (HMM E-Value=1.1)               28   2.7  
SB_56728| Best HMM Match : rve (HMM E-Value=0.33)                      28   3.6  
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9)                       27   4.8  

>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
          Length = 310

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 81  ILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWS-LKNNLTSFYASNL- 254
           ++F +V+     MG  C    L + S  F +    L + IAT W+ + + L  F+A++  
Sbjct: 55  VVFATVLMTFSAMGFNCFGQSLFEFSSSFTALGTLLQLAIATTWTYIFSLLFVFFANDFG 114

Query: 255 QSI 263
           QSI
Sbjct: 115 QSI 117


>SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)
          Length = 794

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 174 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPPP 302
           ++ AL I+I+ + + K  +T F   +   ++ VP    +PPPP
Sbjct: 682 WVTALPIVISDINATKTRMTCFAPKDAIKLRRVPLKAEEPPPP 724


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 50  LSICQIMLYGYIVCFSYEFYYCY 118
           L  C    Y Y  C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 59  CQIMLYGYIVCFSYEFYYCY 118
           C    Y Y  C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493


>SB_25867| Best HMM Match : rve (HMM E-Value=4.4e-13)
          Length = 341

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 174 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPPP 302
           ++ AL I+I+ + + K  +T F   +   ++ VP     PPPP
Sbjct: 144 WITALSIVISDINAAKTRMTGFAPKDAIKLRRVPLKAEKPPPP 186


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 78   VILFVSVMSFTIVMGLECLKTKLVDSSL-MFNSFMCALYIMIATVWSLKNNLTSFY 242
            VI + +  +F + +    +K +  D+ L    S   A +  IA VWS  N +  FY
Sbjct: 941  VISYTTTETFAVTVSSGMVKLQYADAILDTLVSIQIAKWTQIALVWSPTNKILQFY 996


>SB_57616| Best HMM Match : Oxidored_q1 (HMM E-Value=1.1)
          Length = 107

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 15  ILLGHTMGAYTDYRYAKSCYMVI-LFVSVMSFTIVMGLECLKTKLVDSS 158
           +L G  MG++   + A   YM++ + +S+ +FTIV+ L  +K  +V+ S
Sbjct: 29  VLWGIEMGSFESVQ-ASLVYMILYVIMSICTFTIVLALGGVKNLIVEFS 76


>SB_56728| Best HMM Match : rve (HMM E-Value=0.33)
          Length = 255

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 192 IMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPPP 302
           I+I+ + + K  +T F   +   ++ VP    +PPPP
Sbjct: 149 IVISDINATKTRMTGFAPKDAIKLRRVPLKAEEPPPP 185


>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 174 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPPP 302
           ++ AL I ++   + K  +T F   +   ++ VPF    PPPP
Sbjct: 783 WVTALPIGVSDKNATKTRMTGFAPKDAIKLRRVPFKAEKPPPP 825


>SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9)
          Length = 375

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 174 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPPP 302
           ++ AL I ++   + K  +T F   +   ++ VPF    PPPP
Sbjct: 332 WVTALPIGVSDKNATKTRMTGFAPKDAIKLRRVPFKAEKPPPP 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,742,004
Number of Sequences: 59808
Number of extensions: 159823
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)